View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_3 (Length: 461)
Name: NF2046_low_3
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 36093366 - 36093803
Alignment:
| Q |
11 |
gatgaaccgcaattcgactttgattatgaaaaaagtggattatggtctcctccagttccacgtacagtgttcttgagctcaccaggaagcatattcactg |
110 |
Q |
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| T |
36093366 |
gatgaaccgcaattcgactttgattatgaaaaaagtggattatggtctcctccagttccacgtacagtgttcttgagctcaccaggaagcatattcactg |
36093465 |
T |
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| Q |
111 |
accaagaaatgcttgaaagacttagaagcaaaaatgcacgaagtcgtaccaagaaaatcagaatctgtttctgtgtacaatagatata--tatatttttc |
208 |
Q |
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| T |
36093466 |
accaagaaatgcttgaaagacttagaagcaaaaatgcacgaagtcgtaccaagaaaatcagaatctgtttctgtgtacaatagatatatttttttttttc |
36093565 |
T |
|
| Q |
209 |
tttttcatgtttcattagttccaatcttgttcttttggcaggtgttctgttgtttctgacagggaatgtgaagaaagtatgaatgaagattttcatcatt |
308 |
Q |
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| T |
36093566 |
tttttcatgtttcattagttccaatcttgttcttttggcaggtgttctgttgtttctgacagggaatgtgaagaaagtatgaatgaagattttcatcatt |
36093665 |
T |
|
| Q |
309 |
gaatcatgttagaatacaaagagaataaaattttcagtgttactgaattatcatattcatatgaacttactatatttg-tttgaatgtttgttttctttg |
407 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36093666 |
gaatcatgttaggatacaaagagaataaaatttttagtgttactgaattatcatattcatatgaacttactatatttgttttgaatgtttgttttctttt |
36093765 |
T |
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| Q |
408 |
accctagacaaaattgatctataatttattcatgttag |
445 |
Q |
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| T |
36093766 |
accctagacaaaattgatctataatttattcatgttag |
36093803 |
T |
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