View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_30 (Length: 204)
Name: NF2046_low_30
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 34962170 - 34961993
Alignment:
| Q |
9 |
tgagatgaatgagaagctaagctacaaattgaggattgaagttgcaagtatgacaaaattaaagaaagtggcttttggatatctaacatggatggatgtg |
108 |
Q |
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| T |
34962170 |
tgagaagaatgagaagctaagctacaaattgaggattgaagttgcaagtatgacaaaattaaagaaagtggcttttggatatctaacatggatggatgtg |
34962071 |
T |
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| Q |
109 |
aagcatgttgttaggagtcctattgtggtcaccaccctcaaattgaaattctagattcatatgttgttatgatgttgg |
186 |
Q |
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| T |
34962070 |
aagcatgttgttaggagtcctattgtggtcaccaccctcaaattgaaattctagattcatatgttgttatgatgttgg |
34961993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 25927899 - 25927791
Alignment:
| Q |
73 |
aaagtggcttttggatatctaacatggatggatgtgaagcatgttgttaggagtcctattgtggtcaccaccctcaaattgaaattctagattcatatgt |
172 |
Q |
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| T |
25927899 |
aaagtagcttttggatatttaacttggatggatttaaagcacgtggttaggagtcctgttgtggtcaccactctaatattgaaattctagagtcataatt |
25927800 |
T |
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| Q |
173 |
tgttatgat |
181 |
Q |
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| T |
25927799 |
tgttatgat |
25927791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 9947858 - 9947682
Alignment:
| Q |
9 |
tgagatgaatgagaagctaagctacaaattgaggattgaagttgcaagtatgacaaaattaaagaaagtggcttttggatatctaacatggatggatgtg |
108 |
Q |
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| T |
9947858 |
tgagaagaatgagaagctaagatttaagttgaggaatgaagttggaagcatgacaagattaaagaaattggatttcggatatctaacttggatggatgtg |
9947759 |
T |
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| Q |
109 |
aagcatgttgttaggagtcctattgtggtcaccaccctcaaattgaaattctagattcatatgttgttatgatgttg |
185 |
Q |
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| T |
9947758 |
agtcatgtggttaggagtcctgttgtggtcaccaccctcaaatttaaatcctaaatctatatattgttatgatgttg |
9947682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 8958683 - 8958812
Alignment:
| Q |
9 |
tgagatgaatgagaagctaagctacaaattgaggattgaagttgcaagtatgacaaaattaaagaaagtggcttttggatatctaacatggatggatgtg |
108 |
Q |
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||||| ||||||||| ||||||||||| |||||||||||||| ||||| | ||||||| | ||||||||||||||||| |||||||| ||||||||| | |
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| T |
8958683 |
tgagaagaatgagaaactaagctacaagttgaggattgaagtggcaagaacgacaaaaatgaagaaagtggcttttgggtatctaacttggatggatacg |
8958782 |
T |
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| Q |
109 |
aagcatgttgttaggagtcctattgtggtc |
138 |
Q |
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| T |
8958783 |
aagcatgtggttagaagtccaattgtggtc |
8958812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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