View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_8 (Length: 372)
Name: NF2046_low_8
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 2352885 - 2352547
Alignment:
| Q |
17 |
acaatacaactaagattttttaaactctaacgtataatcaaacccacttggtgcttactacttaagcagtgttggnnnnnnnnnnnnnnacagtattcac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2352885 |
acaatacaactaagattttttaaactctaacgtataatcaaacccacttggtgcttactacttaagcagtgttggttttttttttt---acagtattcac |
2352789 |
T |
|
| Q |
117 |
attctcaaccagatttggtcccctacactgtatctattaaaattgatgccttaattaatttgctctttcaataagaaacatgtcacaaggtaatgatcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352788 |
attctcaaccagatttggtcccctacactgtatctattaaaattgatgccttaattaatttgctctttcaataagaaacatgtcacaaggtaatgatcaa |
2352689 |
T |
|
| Q |
217 |
ctcgttacacatgacacaccctaacccgtacacaaaaccggagaaagccaaaaatacggaggattttctattattttgaggtcccctgaacattaaatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352688 |
ctcgttacacatgacacaccctaacccgtacacaaaaccggaaaaagccaaaaatacggaggattttctattattttgaggtcccctgaacattaaatct |
2352589 |
T |
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| Q |
317 |
tagccgtacacgtagcatatgtccgtccaatgatttcttgcctttg |
362 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2352588 |
tagccgtacacgtagcatat----gtccaatgatttcttgcctttg |
2352547 |
T |
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