View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2046_low_9 (Length: 371)
Name: NF2046_low_9
Description: NF2046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2046_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 20015178 - 20015538
Alignment:
| Q |
11 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20015178 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
20015277 |
T |
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| Q |
111 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20015278 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
20015377 |
T |
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| Q |
211 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactccaatttctgagcttcaagaatcaaattagctaaacccttgatatttcctttct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || | |
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| T |
20015378 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactctaatttttgagcttcgataatcaaattagctaaacccttaatatttcccttat |
20015477 |
T |
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| Q |
311 |
gaagatattcgttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctc |
371 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20015478 |
gaagatattccttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctc |
20015538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 19701437 - 19701077
Alignment:
| Q |
11 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19701437 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
19701338 |
T |
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| Q |
111 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19701337 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatattatgcgctttgtctgataatccaatactaacacaagcatta |
19701238 |
T |
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| Q |
211 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactccaatttctgagcttcaagaatcaaattagctaaacccttgatatttcctttct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || | |
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| T |
19701237 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactctaatttttgagcttcgataatcaaattagctaaacccttaatatttcccttat |
19701138 |
T |
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| Q |
311 |
gaagatattcgttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctc |
371 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19701137 |
gaagatattccttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctc |
19701077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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