View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_high_12 (Length: 347)
Name: NF20470_high_12
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 347
Target Start/End: Complemental strand, 8854921 - 8854615
Alignment:
| Q |
51 |
gagtggtcctgcttcacttcaatttgtaggaacaggatttccacattcatttgcaaattatcaaagcacaattgagactaatacattagaaaca------ |
144 |
Q |
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| T |
8854921 |
gagtggttctgcttcacttcaatttgtaggaacaggatttccacattcatttgcaaattatcaaagcacaattgagactaatacattagaaacaaaagaa |
8854822 |
T |
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| Q |
145 |
---tattaataacttaagctatattttaactgggnnnnnnnn-tatattttagtttgaaaagtgttcaataattattaacaatggccttaatctcatctt |
240 |
Q |
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| T |
8854821 |
acatattaataacttaagctatattttaactgggaaaaaaaaatatattttagtttgaaaagtgttcaataattattaacaatggccttaatctcatctt |
8854722 |
T |
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| Q |
241 |
ctctcactatatccttttcatctaaccactttgattgcaaggcttcttttcaatcatcaacttcttctccacagtgtgtgagcctttccacacttccatc |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8854721 |
ctctcactatatccttttcatctaaccactttgattgcaaggcttcttttcaatcatcaacttcttctccacagtgtgtgagcctttcctcacttccatc |
8854622 |
T |
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| Q |
341 |
actccct |
347 |
Q |
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||||||| |
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| T |
8854621 |
actccct |
8854615 |
T |
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