View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_high_15 (Length: 324)

Name: NF20470_high_15
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_high_15
NF20470_high_15
[»] chr7 (7 HSPs)
chr7 (16-309)||(47291968-47292261)
chr7 (39-309)||(47298590-47298868)
chr7 (151-233)||(47243159-47243241)
chr7 (153-308)||(47267988-47268143)
chr7 (110-233)||(47257286-47257409)
chr7 (111-218)||(47284043-47284150)
chr7 (151-218)||(47279450-47279517)
[»] chr5 (1 HSPs)
chr5 (110-231)||(32731828-32731949)
[»] chr3 (1 HSPs)
chr3 (164-233)||(20519835-20519904)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 47291968 - 47292261
Alignment:
Q  16 aatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttatttaacatgaatcacgacattacaaactacaacaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47291968 aatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgacattacaaactacaacaaac 47292067  T
Q  116 tataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292068 tataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcag 47292167  T
Q  216 agggcaaacaaattggtacattcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc 309  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292168 agggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc 47292261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 47298590 - 47298868
Alignment:
Q  39 ctttcattatcattatatagcacacaagcccccaactttatttaacatgaatcacgaca--------ttacaaactacaacaaactataaggtagacatc 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||        |||||||||||||||||||||||||||||||||    
T  47298590 ctttcattatcattatatagcacacaagcccccaactttatttaacagcaatcacgacagtacaattttacaaactacaacaaactataaggtagacatc 47298689  T
Q  131 gcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg 230  Q
    |||||| || ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47298690 gcaaaactaggagcactcaatgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg 47298789  T
Q  231 gtacattcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc 309  Q
    |||   |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  47298790 gtaacatcaaagtttcttctccttttatattcttatatgggacgatataggttgctccaggaaaaggtccagccccacc 47298868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 47243241 - 47243159
Alignment:
Q  151 tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta 233  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  47243241 tgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta 47243159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 47268143 - 47267988
Alignment:
Q  153 taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtacattcaaagtttcttctcc 252  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||   | |||  |||||||||    
T  47268143 taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc 47268044  T
Q  253 atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac 308  Q
     | || |||||||| ||||| |||||||| || ||||||||| |  ||||||||||    
T  47268043 ttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac 47267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 47257409 - 47257286
Alignment:
Q  110 acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat 209  Q
    |||||||||||||||||||     ||| || || |||||  ||||||||||||||||||||||||||| ||||| ||||| ||  |||||||||||||||    
T  47257409 acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat 47257310  T
Q  210 cttcagagggcaaacaaattggta 233  Q
    ||||||  ||||| ||||||||||    
T  47257309 cttcaggaggcaagcaaattggta 47257286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 47284150 - 47284043
Alignment:
Q  111 caaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc 210  Q
    |||||||||||||||| ||  ||||| || || || ||| |||||| | |||||| ||||||| ||||| ||| |||||||  ||||||||||||||| |    
T  47284150 caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac 47284051  T
Q  211 ttcagagg 218  Q
    ||||||||    
T  47284050 ttcagagg 47284043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 47279517 - 47279450
Alignment:
Q  151 tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagg 218  Q
    |||||| | |||||||||||||| ||||| ||| |||||||  ||||||||||||||| |||||||||    
T  47279517 tgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagagg 47279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 32731949 - 32731828
Alignment:
Q  110 acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat 209  Q
    |||||||||||||||||||     ||| || || |||||  ||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  32731949 acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat 32731850  T
Q  210 cttcagagggcaaacaaattgg 231  Q
    |||||| |||||| ||||||||    
T  32731849 cttcagggggcaagcaaattgg 32731828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 20519904 - 20519835
Alignment:
Q  164 tggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta 233  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||    
T  20519904 tggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggta 20519835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University