View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_high_16 (Length: 323)

Name: NF20470_high_16
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_high_16
NF20470_high_16
[»] chr5 (1 HSPs)
chr5 (9-305)||(1755182-1755478)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 1755182 - 1755478
Alignment:
Q  9 gataattctatattcttagattannnnnnnnnattctagacatatatttgacagtaaagattataattttgtagtgtgtgtgttagtagagaagtggaaa 108  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1755182 gataattctatattcttagattatttttttttattctagacatatatttgacagtaaagattataattttgtagtgtgtgtgtaagtagagaagtggaaa 1755281  T
Q  109 tctttgtttttagcatatataaagatgatactatattgaaggaagatccatataaagcaacacaaatcaactagttcaaacaaatatccattaataatgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1755282 tctttgtttttagcatatataaagatgatactatattgaaggaagatccatataaagcaacacaaatcaactagttcaaacaaatatccattaataatgc 1755381  T
Q  209 aaaaggtaactaactgactagaagaaaagattcaaaatacacagtgataactcatgttctacatcttttaacatacttaccgatacgagggtgtaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1755382 aaaaggtaactaactgactagaagaaaagattcaaaatacacagtgataactcatgttctacatcttttaacatacttaccgatacgagggtgtaat 1755478  T

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