View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_high_22 (Length: 259)
Name: NF20470_high_22
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 592757 - 592529
Alignment:
| Q |
10 |
aacatggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaat |
109 |
Q |
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| T |
592757 |
aacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtggtgatacattt--atcacaat |
592660 |
T |
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| Q |
110 |
ttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
592659 |
gtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacactgcaacttg |
592560 |
T |
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| Q |
210 |
aattcattatcatattttgataagctggaga |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
592559 |
aattcattatcatattttgataagctggaga |
592529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 579671 - 579899
Alignment:
| Q |
10 |
aacatggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaat |
109 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
579671 |
aacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtggtgataca--tttatcacaat |
579768 |
T |
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| Q |
110 |
ttcagc--------agtcatgtttgcatcccaatggttat-caactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacac |
200 |
Q |
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||||| | |||||||||||| | ||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
579769 |
gtcagctgtcatgtactcatgtttgcat-ctaatggttatccacctccacacttttcatgaagccaaattct--------ttgaaaataaaattttacac |
579859 |
T |
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| Q |
201 |
ttcaacttgaattcattatcatattttgataagctggaga |
240 |
Q |
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| T |
579860 |
tgcaacttgaattcattatcatattttgataagctggaga |
579899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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