View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_high_23 (Length: 250)

Name: NF20470_high_23
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_high_23
NF20470_high_23
[»] chr6 (3 HSPs)
chr6 (69-221)||(27444127-27444279)
chr6 (92-220)||(33054054-33054182)
chr6 (69-103)||(31444771-31444805)
[»] chr4 (5 HSPs)
chr4 (69-239)||(26720237-26720407)
chr4 (114-241)||(14586727-14586854)
chr4 (92-220)||(3649906-3650034)
chr4 (69-103)||(32651290-32651324)
chr4 (69-103)||(38467731-38467765)
[»] scaffold0003 (2 HSPs)
scaffold0003 (69-221)||(43082-43234)
scaffold0003 (92-221)||(36898-37027)
[»] chr3 (7 HSPs)
chr3 (95-221)||(31687908-31688034)
chr3 (148-221)||(31896833-31896906)
chr3 (148-221)||(31912542-31912615)
chr3 (148-221)||(31946190-31946263)
chr3 (92-138)||(19766049-19766095)
chr3 (65-103)||(46233983-46234021)
chr3 (36-70)||(36324260-36324294)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-241)||(230520-230647)
[»] scaffold0152 (1 HSPs)
scaffold0152 (92-160)||(10230-10298)
[»] scaffold0014 (1 HSPs)
scaffold0014 (69-138)||(32615-32684)
[»] chr8 (3 HSPs)
chr8 (67-103)||(44663703-44663739)
chr8 (92-131)||(19962065-19962104)
chr8 (67-103)||(35348989-35349025)
[»] chr1 (3 HSPs)
chr1 (68-104)||(31771393-31771429)
chr1 (69-103)||(32440669-32440703)
chr1 (68-104)||(7608405-7608441)
[»] chr2 (2 HSPs)
chr2 (69-103)||(4453778-4453812)
chr2 (69-103)||(9208570-9208604)
[»] chr7 (1 HSPs)
chr7 (67-103)||(21820194-21820230)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 27444127 - 27444279
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 168  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgcca 27444226  T
Q  169 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  27444227 cttatttatcagccatagatctgatcttgctgctggctggcacaaatcacaat 27444279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 33054182 - 33054054
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 191  Q
    ||||||||  |||||||||   |||||||||||||||||| |||||||| ||||| |||| ||| |||||||| ||||||| |||| ||   || ||||     
T  33054182 ttaacacttaaaaccctaaacctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggcaccacttaattatgagccctacatcta 33054083  T
Q  192 atcttgctgctggctggcacaaatcacaa 220  Q
    ||||||||  ||||| |||||||||||||    
T  33054082 atcttgcttatggctagcacaaatcacaa 33054054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 31444771 - 31444805
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||| |||||||||||||||||||||    
T  31444771 atctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 26720237 - 26720407
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 168  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  26720237 atctaacttattcctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcacca 26720336  T
Q  169 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaa 239  Q
    ||||||||||||   || |||| ||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  26720337 cttatttatcagccatagatctaatcttgctgttggctagcacaaatcacaatacacacttcaatttcaaa 26720407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 14586854 - 14586727
Alignment:
Q  114 tacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaa 213  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||  ||||| || ||||||    
T  14586854 tacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgctgactagcacaa 14586755  T
Q  214 atcacaatgcacacttcaatttcaaatt 241  Q
    |||||||| |||||||||||||||||||    
T  14586754 atcacaatacacacttcaatttcaaatt 14586727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 3649906 - 3650034
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 191  Q
    ||||||||  ||||||||| | |||||||||||||||||| |||||||| ||||| |||| ||| ||||||| ||| |||| |||| |    || |||||    
T  3649906 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgccgcttaattatgaaccctacatctg 3650005  T
Q  192 atcttgctgctggctggcacaaatcacaa 220  Q
    |||||| |  ||||| |||||||||||||    
T  3650006 atcttgtttatggctagcacaaatcacaa 3650034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 32651324 - 32651290
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||| |||||||||||||||||||||    
T  32651324 atctaacttattcctaatcctagttaacactccaa 32651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 38467765 - 38467731
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    |||||||||||| ||||||||||||||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaa 38467731  T

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Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 43234 - 43082
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 168  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgcca 43135  T
Q  169 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||||||   || |||||||||||||||||||| ||||||||||||||    
T  43134 cttatttatcagccatagatctgatcttgctgctggcttgcacaaatcacaat 43082  T

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Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 37027 - 36898
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 191  Q
    |||||||| |||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||   || |||||    
T  37027 ttaacacttcaaatcctaattcttcttttttaggcgccaaacaatcctagcccttggatctacacctttggttgccacttatttatcagccatagatctg 36928  T
Q  192 atcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||| ||||| ||||||||||||||    
T  36927 atcttgctgatggctagcacaaatcacaat 36898  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 31687908 - 31688034
Alignment:
Q  95 acactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatc 194  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   || ||||||||    
T  31687908 acactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccatagatctgatc 31688007  T
Q  195 ttgctgctggctggcacaaatcacaat 221  Q
    |||||||||||| ||||||||||||||    
T  31688008 ttgctgctggctagcacaaatcacaat 31688034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 31896906 - 31896833
Alignment:
Q  148 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31896906 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31896833  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 31912615 - 31912542
Alignment:
Q  148 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31912615 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31912542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 31946263 - 31946190
Alignment:
Q  148 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 221  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31946263 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31946190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 19766049 - 19766095
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 138  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  19766049 ttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 19766095  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 46234021 - 46233983
Alignment:
Q  65 agttatctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46234021 agttatctaacttattcctaatcctagttaacactccaa 46233983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 36324294 - 36324260
Alignment:
Q  36 tttggacaggcatattcctacctatcccaagttat 70  Q
    ||||||||||||||||||||||||||||| |||||    
T  36324294 tttggacaggcatattcctacctatcccaggttat 36324260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 230520 - 230647
Alignment:
Q  114 tacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaa 213  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||  ||||| || ||||||    
T  230520 tacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgctgactagcacaa 230619  T
Q  214 atcacaatgcacacttcaatttcaaatt 241  Q
    |||||||| |||||||||||||||||||    
T  230620 atcacaatacacacttcaatttcaaatt 230647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 10230 - 10298
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacaccttt 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10230 ttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacaccttt 10298  T

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Target: scaffold0014 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 32615 - 32684
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 138  Q
    ||||||||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 32684  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 44663739 - 44663703
Alignment:
Q  67 ttatctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44663739 ttatctaacttattcctaatcctagttaacactccaa 44663703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 19962065 - 19962104
Alignment:
Q  92 ttaacactccaaaccctaattttacttttttaggcgccaa 131  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  19962065 ttaacacttaaaaccctaattttacttttttaggcgccaa 19962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 35348989 - 35349025
Alignment:
Q  67 ttatctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35348989 ttatctaacttatttctaatcctagttaacactccaa 35349025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 31771429 - 31771393
Alignment:
Q  68 tatctaacttattcataatcctagttaacactccaaa 104  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31771429 tatctaacttattcctaatcctagttaacactccaaa 31771393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 32440703 - 32440669
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||| |||||||||||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaa 32440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 7608441 - 7608405
Alignment:
Q  68 tatctaacttattcataatcctagttaacactccaaa 104  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  7608441 tatctaacttattcctaatcctagttaaaactccaaa 7608405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 4453778 - 4453812
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||| |||||||||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaa 4453812  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 9208570 - 9208604
Alignment:
Q  69 atctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||| |||||||||||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaa 9208604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 21820230 - 21820194
Alignment:
Q  67 ttatctaacttattcataatcctagttaacactccaa 103  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21820230 ttatctaacttattcctaatcctaattaacactccaa 21820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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