View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_high_25 (Length: 229)
Name: NF20470_high_25
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 30048311 - 30048482
Alignment:
| Q |
37 |
ccttatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagatgtatattgaatgtgtt |
136 |
Q |
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| T |
30048311 |
ccttatttgaacttggagaaagatgaaacagttgatgcttgaaagatttttacctaaagattatgaacagattctatataagatgtatattgaatgtgtt |
30048410 |
T |
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| Q |
137 |
cagggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaattgggcgag |
208 |
Q |
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| T |
30048411 |
cagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgtaatgaattaggcgag |
30048482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 30050598 - 30050769
Alignment:
| Q |
37 |
ccttatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagatgtatattgaatgtgtt |
136 |
Q |
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| T |
30050598 |
ccttatttgaacttggagaaagatgaaacagttgatgcttgaaagatttttacctaaagattatgaacagattctatataagatgtatattgaatgtgtt |
30050697 |
T |
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| Q |
137 |
cagggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaattgggcgag |
208 |
Q |
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| T |
30050698 |
cagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgtaatgaattaggcgag |
30050769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 3536693 - 3536869
Alignment:
| Q |
32 |
aaacaccttatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagatgtatattgaat |
131 |
Q |
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| T |
3536693 |
aaacaccctattcgaacttggagaaagatgaaacagttgatgcttgacagatttttacctgaagattatgaacagattctatataagatgtatattgaat |
3536792 |
T |
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| Q |
132 |
gtgttcagggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaattgggcgag |
208 |
Q |
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| T |
3536793 |
gtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaacgtaacgaattaggcgag |
3536869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 2156645 - 2156806
Alignment:
| Q |
40 |
tatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagatgtatattgaatgtgttcag |
139 |
Q |
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|||| ||||||||||||| |||||||| | ||||||||| |||||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
2156645 |
tattcgaacttggagaaagatgaaacagtcgatgcttgacagatttttacctgaagattatgaacaaattctatataagatgtatactgaatgtgttcag |
2156744 |
T |
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| Q |
140 |
ggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaatt |
201 |
Q |
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| T |
2156745 |
ggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaatgtaatgaatt |
2156806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 32163241 - 32163057
Alignment:
| Q |
21 |
agaggaaaaggaaacaccttatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagat |
120 |
Q |
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| T |
32163241 |
agaggcaaagaaaaaaccctattcgaacttgcagaaggatgaaacagttgatgcttaaaagatttttacttgaagattacgaacaaattttgtataatat |
32163142 |
T |
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| Q |
121 |
gtatattgaatgtgttcagggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaattgggc |
205 |
Q |
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| T |
32163141 |
gtatattgaatgtgtttagggcaaccgatcaatgacagagtacacacatgaaattttccgtttttctgaacgtaataaattgggc |
32163057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 22571878 - 22571742
Alignment:
| Q |
21 |
agaggaaaaggaaacaccttatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagat |
120 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| || || |||||||||||||||| |||||||||||| ||||||||| ||||||| |
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| T |
22571878 |
agaggaaaaggaaacaccttattcaaagttggagaaatatgaaacagttaattcttgaaagatttttacctgaagattatgatcaaattttgtataagat |
22571779 |
T |
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| Q |
121 |
gtatattgaatgtgttcagggcaagcgatcagtgaca |
157 |
Q |
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|||||||||||||||| |||||||| ||||| ||||| |
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| T |
22571778 |
gtatattgaatgtgtttagggcaagtgatcaatgaca |
22571742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 22926058 - 22925890
Alignment:
| Q |
40 |
tatttgaacttggagaaatatgaaacacttgatgcttgaaagatttttacttgaagattatgaacaaattttgcataagatgtatattgaatgtgttcag |
139 |
Q |
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|||| ||||||||||||| |||||||| |||||||||| ||| |||||| | ||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
22926058 |
tattcgaacttggagaaagatgaaacagttgatgcttggcagagttttacctaaagattatgaacagattctatataagatgtatattgaatgtgttcag |
22925959 |
T |
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| Q |
140 |
ggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgtaatgaattgggcgag |
208 |
Q |
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||||||||||||||||| ||||| | |||| |||||| ||||||||||||||||||||| |||||| |
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| T |
22925958 |
ggcaagcgatcagtgactgagtacacggctgagtttttgcgtttttctgaacgtaatgaattaggcgag |
22925890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 8218874 - 8218986
Alignment:
| Q |
95 |
gattatgaacaaattttgcataagatgtatattgaatgtgttcagggcaagcgatcagtgacattgtacaggactgaatttttgtatttttctgaacgta |
194 |
Q |
| |
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||||| ||||||||| || |||||||||||||| ||| |||||| |||||| ||||||||||| ||||| | |||||||||||| ||||||||||| || |
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| T |
8218874 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
8218973 |
T |
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| Q |
195 |
atgaattgggcga |
207 |
Q |
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||||||||||||| |
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| T |
8218974 |
atgaattgggcga |
8218986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 368346 - 368288
Alignment:
| Q |
27 |
aaaggaaacaccttatttgaacttggagaaatatgaaacacttgatgcttgaaagattt |
85 |
Q |
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|||| ||| ||| |||| |||||||||||| |||||||| |||||||||||||||||| |
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| T |
368346 |
aaagaaaaaaccctattcgaacttggagaaggatgaaacagttgatgcttgaaagattt |
368288 |
T |
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