View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_high_3 (Length: 492)
Name: NF20470_high_3
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5356605 - 5356531
Alignment:
| Q |
9 |
gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat |
83 |
Q |
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| T |
5356605 |
gaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaat |
5356531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5363247 - 5363173
Alignment:
| Q |
9 |
gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat |
83 |
Q |
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| T |
5363247 |
gaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaat |
5363173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5368463 - 5368389
Alignment:
| Q |
9 |
gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat |
83 |
Q |
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| T |
5368463 |
gaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaat |
5368389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5375017 - 5374943
Alignment:
| Q |
9 |
gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat |
83 |
Q |
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| T |
5375017 |
gaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaat |
5374943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 5369281 - 5369222
Alignment:
| Q |
9 |
gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctga |
68 |
Q |
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| T |
5369281 |
gaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctga |
5369222 |
T |
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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 8400155 - 8400193
Alignment:
| Q |
436 |
gacaattgagagaattcggaaataaaattttgcgataaa |
474 |
Q |
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| T |
8400155 |
gacaattgagagaattcggaaataaaattttgcgataaa |
8400193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 5363002 - 5362958
Alignment:
| Q |
258 |
atagttaaattgacaagtgtggtacttgatatacaaagaatttgt |
302 |
Q |
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| T |
5363002 |
atagttaagttgacaagcgttgtacttgatatacaaagactttgt |
5362958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 5368218 - 5368174
Alignment:
| Q |
258 |
atagttaaattgacaagtgtggtacttgatatacaaagaatttgt |
302 |
Q |
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| T |
5368218 |
atagttaagttgacaagcgttgtacttgatatacaaagactttgt |
5368174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 5368957 - 5368897
Alignment:
| Q |
328 |
gaatgaccaaagtatgcaactggttaaaggaagagaagggctcagcgcaaccatcatcacc |
388 |
Q |
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| T |
5368957 |
gaatgatcaaagtattcaacttgttcaaggttgagaagggttcagcacaaccatcatcacc |
5368897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 7178543 - 7178499
Alignment:
| Q |
258 |
atagttaaattgacaagtgtggtacttgatatacaaagaatttgt |
302 |
Q |
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| T |
7178543 |
atagttaaattgacaagtgtgaaacttgatatacatagaacttgt |
7178499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 30054738 - 30054810
Alignment:
| Q |
236 |
ggtataaaatccatgtccagaaatagttaaattgacaagtgtggtacttgatatacaaagaatttgtacatcc |
308 |
Q |
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| T |
30054738 |
ggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcc |
30054810 |
T |
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