View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_high_4 (Length: 487)
Name: NF20470_high_4
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 103 - 469
Target Start/End: Original strand, 25246939 - 25247304
Alignment:
| Q |
103 |
gacattatttaatatgaaaatgaaagaaaatgacactgaactcttcctcatacactcatttgatatccaaattgaaacaccataattttttattaacctt |
202 |
Q |
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| T |
25246939 |
gacattatttaatatgaaaatgaaagaaaatgacactgaactcttcctcatacactcatttgatatccaaattgaaacaccataattttttattaacctt |
25247038 |
T |
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| Q |
203 |
gcggttgaattatattggcatatagagtatgttattacaagtacaacgtgtaattgatctatatactcagaatctttcatatgtctcatattttgtaaca |
302 |
Q |
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| T |
25247039 |
gcggttgaattatattggcatatagagtatgttattacaagtacaacgtgtaattaatctatatactcggaatctttcatatgtctcatattttgtaaca |
25247138 |
T |
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| Q |
303 |
ttaaaatacataagataagatacacataaagaactatggaagataaatatacgcaggtat-aaatacaatacaaagaaataaatacatacatacgcaaat |
401 |
Q |
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| T |
25247139 |
ttaaaatacataagataagatacacataaagaactatggaagataaatatacgcaggtataaaatacaatacaaagaaataa----atacatacgcaaat |
25247234 |
T |
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| Q |
402 |
taacgta--ataatttttactcaaacgtttacggagcaacgttgatccacttgatacttaacggcgtttt |
469 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25247235 |
taacgtaatataatttttactcaaacgttaacggagcaacgttgatccacttgatacttaacggcgtttt |
25247304 |
T |
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