View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_low_10 (Length: 388)

Name: NF20470_low_10
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_low_10
NF20470_low_10
[»] chr3 (4 HSPs)
chr3 (18-376)||(11005458-11005816)
chr3 (6-376)||(11024036-11024403)
chr3 (13-376)||(11015021-11015384)
chr3 (19-282)||(47451524-47451793)
[»] chr4 (40 HSPs)
chr4 (18-370)||(48852851-48853206)
chr4 (18-263)||(45371717-45371962)
chr4 (6-282)||(48147337-48147619)
chr4 (126-370)||(49043704-49043948)
chr4 (79-283)||(48156052-48156262)
chr4 (197-366)||(7790432-7790601)
chr4 (18-366)||(45365760-45366114)
chr4 (100-263)||(50666561-50666733)
chr4 (161-263)||(49038521-49038623)
chr4 (126-282)||(49048179-49048334)
chr4 (6-263)||(37826633-37826902)
chr4 (206-263)||(48864396-48864453)
chr4 (13-124)||(48705170-48705281)
chr4 (148-254)||(48903255-48903364)
chr4 (197-263)||(7765994-7766060)
chr4 (197-263)||(7771747-7771813)
chr4 (82-184)||(43596153-43596255)
chr4 (202-376)||(48870917-48871091)
chr4 (202-376)||(48876221-48876395)
chr4 (6-124)||(49043977-49044095)
chr4 (198-263)||(7813830-7813895)
chr4 (197-263)||(7237386-7237452)
chr4 (197-263)||(7773468-7773534)
chr4 (197-263)||(7786816-7786882)
chr4 (197-263)||(7878735-7878801)
chr4 (202-376)||(48886603-48886777)
chr4 (198-263)||(7800990-7801055)
chr4 (206-263)||(7908663-7908720)
chr4 (206-259)||(45384539-45384592)
chr4 (193-254)||(48861636-48861697)
chr4 (1-38)||(48898881-48898918)
chr4 (207-255)||(50672860-50672908)
chr4 (153-192)||(7878048-7878087)
chr4 (220-259)||(48735058-48735097)
chr4 (89-164)||(48861505-48861580)
chr4 (18-120)||(7765806-7765908)
chr4 (198-263)||(7823322-7823387)
chr4 (63-192)||(45384618-45384747)
chr4 (220-257)||(48734178-48734215)
chr4 (206-254)||(47208238-47208286)
[»] chr6 (4 HSPs)
chr6 (18-370)||(21015994-21016346)
chr6 (26-123)||(21979420-21979517)
chr6 (209-256)||(21979278-21979325)
chr6 (212-252)||(14197337-14197377)
[»] chr5 (8 HSPs)
chr5 (19-283)||(9119928-9120201)
chr5 (18-249)||(179222-179462)
chr5 (65-263)||(42561976-42562174)
chr5 (209-280)||(29696600-29696671)
chr5 (206-260)||(29688490-29688544)
chr5 (58-116)||(29688336-29688394)
chr5 (19-108)||(29696401-29696490)
chr5 (206-278)||(29712069-29712141)
[»] chr8 (15 HSPs)
chr8 (251-370)||(4030324-4030443)
chr8 (206-255)||(4031577-4031626)
chr8 (50-187)||(4962244-4962385)
chr8 (62-186)||(12200553-12200677)
chr8 (62-186)||(12444981-12445105)
chr8 (62-124)||(12195535-12195597)
chr8 (62-124)||(12439963-12440025)
chr8 (206-263)||(15349244-15349301)
chr8 (206-261)||(4962161-4962219)
chr8 (26-105)||(4031710-4031789)
chr8 (68-182)||(15349100-15349214)
chr8 (206-263)||(12195685-12195742)
chr8 (206-263)||(12200703-12200760)
chr8 (206-263)||(12440113-12440170)
chr8 (206-263)||(12445131-12445188)
[»] chr7 (1 HSPs)
chr7 (206-263)||(48884185-48884242)
[»] chr1 (6 HSPs)
chr1 (71-263)||(24340634-24340829)
chr1 (71-263)||(24352999-24353194)
chr1 (211-263)||(24367531-24367583)
chr1 (206-263)||(24310577-24310634)
chr1 (206-263)||(24416139-24416196)
chr1 (214-263)||(24323139-24323188)
[»] chr2 (1 HSPs)
chr2 (252-366)||(29350829-29350943)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 11005816 - 11005458
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005816 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 11005717  T
Q  118 ccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatggg 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005716 ccatatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatggg 11005617  T
Q  218 ttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctacaaa 317  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  11005616 ttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgtcttatctattgatggcatttgcattcagtacgatccgccaatatgctttacaaa 11005517  T
Q  318 atgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11005516 atgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatggcaatg 11005458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 11024403 - 11024036
Alignment:
Q  6 agggtcactctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactttta 105  Q
    |||| |||||| |||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||     
T  11024403 agggacactctttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttg 11024304  T
Q  106 gagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaa 205  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  11024303 gagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaa 11024204  T
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||| || ||||| |||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatttacattcagtatgatcccccaat 11024104  T
Q  306 atgctctacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    |||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||| |||||    
T  11024103 atgctctacaaaatgtggtcatattattggaacaaa---tggtactggattggtgaagtatgatggcaatg 11024036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 11015384 - 11015021
Alignment:
Q  13 ctctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgc 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11015384 ctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgc 11015285  T
Q  113 cttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaat 212  Q
     ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||    
T  11015284 attttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaat 11015185  T
Q  213 atgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctct 312  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||| ||||| |||| | ||  |||| ||||||||||||    
T  11015184 atgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatttccattgagtattatcccccaatatgctct 11015085  T
Q  313 acaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    |||||| |||||  ||||||||| ||||||||||||  || |||||| |||||||||| |||||    
T  11015084 acaaaaagtggtggtattattggaacaaatggtggtggtgaattggtaaagtatgatggcaatg 11015021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 47451793 - 47451524
Alignment:
Q  19 aatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttc 118  Q
    |||||| ||||| |||||||  ||||||| |||||| | || ||| ||||||||| ||  ||||||||| ||||||| ||| |||||||  ||  ||| |    
T  47451793 aatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgc 47451694  T
Q  119 cagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgg------gggatgaaacaattgaaat 212  Q
    |||||| |||||| ||||||||||   |||||| ||||||| ||||||||||||||||||||||| ||| | |||         |||| | | |||||||    
T  47451693 cagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaat 47451594  T
Q  213 atgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatt 282  Q
    |||||| |||||||||||||||||  |||||||||||   |||||||||||  |  ||||||||||||||    
T  47451593 atgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcatt 47451524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 48852851 - 48853206
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggat---gttattgttggctttgatttagtggaaaggaaacttttagagatgcct 114  Q
    ||||||| |||||||||||||  ||||||| ||||||||  ||||| ||   |||||||| | |||||||||| |||||||||||||||||||| || ||    
T  48852851 taatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtct 48852950  T
Q  115 tttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatat 214  Q
    || || |||| |||| | ||||||||||   |||| ||||||||| ||||| |||||||||| ||| ||||||  ||||||||||| ||| |||||||||    
T  48852951 ttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatgggggatgatacagttgaaatat 48853050  T
Q  215 gggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctac 314  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||  | ||| ||  |  ||||  || ||| |||  | | |||||||| | |||    
T  48853051 gggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactacttttccccaatatgttgtac 48853150  T
Q  315 aaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatg 370  Q
    |||  ||||| |||||||||| ||  |||||| || ||||||||||||||||||||    
T  48853151 aaagagtggtgatattattggaacggatggtgatagtggattggtgaagtatgatg 48853206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 45371962 - 45371717
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 117  Q
    ||||||| ||||| ||||||| |||||||| |||||||| || |||  ||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||     
T  45371962 taatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtctttg 45371863  T
Q  118 ccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatggg 217  Q
    || ||||||||||| | ||  |||| | |||||||||| ||| |||| ||| ||||||| ||||| ||||||| |  ||| || ||| ||||||||||||    
T  45371862 cctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaatatggg 45371763  T
Q  218 ttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  45371762 ttatgaaagaatacaaagtgcattcgtcttggactaagacttttgt 45371717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 48147619 - 48147337
Alignment:
Q  6 agggtcactctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactttta 105  Q
    ||||||||| | || |||| |||||||||||||  |||||| | |||||||  ||| |||||||||| |||  ||||||||| ||||||||| |||||||    
T  48147619 agggtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatggaaaggagactttta 48147520  T
Q  106 gagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatga----- 200  Q
    |||||||||||||||||||||||||  | |||| ||  | || || |||||||| |||||||| ||||||| ||||||  || |||||   ||||         
T  48147519 gagatgccttttccagatggttttggccttgaatctgaatatagtcatttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaata 48147420  T
Q  201 -aacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatt 282  Q
      | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||    
T  48147419 gcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcatt 48147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 126 - 370
Target Start/End: Complemental strand, 49043948 - 49043704
Alignment:
Q  126 ttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaa 225  Q
    |||||| |||||||||| |||||||||||||||| ||||||| ||| |||||||| ||||| |||    | |||| | | ||||||||||||| ||||||    
T  49043948 ttttgaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaatatgggtgatgaaa 49043849  T
Q  226 gaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctacaaaatgtggtc 325  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||||||| ||||  || ||| |||    |||||||||| | |||||||  ||||     
T  49043848 gaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattacttcgctccaatatgttgtacaaaaattggtg 49043749  T
Q  326 atattattgggacaaatggtggtactggattggtgaagtatgatg 370  Q
    |||||||||| ||  ||||||    ||||||||||||||||||||    
T  49043748 atattattggaactgatggtgaagttggattggtgaagtatgatg 49043704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 48156262 - 48156052
Alignment:
Q  79 tttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacct-atagattgtgatttgtggatatttggagaatttctt 177  Q
    ||||||||| ||||  ||||||||||||||||||||||||| ||||||||| | |||  | || ||| ||||| |||||||| ||||||||||||||||     
T  48156262 tttgatttaatggatcggaaacttttagagatgccttttcctgatggttttcaccatacaactgata-attgtaatttgtgggtatttggagaatttctc 48156164  T
Q  178 agtctatgggctatgg---ggg---atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatcta 271  Q
    ||| |||||||| | |   |||   |||||| | ||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |  |||    
T  48156163 agtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttccta 48156064  T
Q  272 ttgatggcattt 283  Q
    ||||||||||||    
T  48156063 ttgatggcattt 48156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 7790432 - 7790601
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacga 296  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||| ||||     ||| |||      
T  7790432 atgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccattcctgatcactactt 7790531  T
Q  297 tcctccaatatgctctacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtat 366  Q
    ||  || ||||  |||||||||| |||| |||||||||| | ||||  ||||||| ||||||||||||||    
T  7790532 tcaacctatatattctacaaaatatggtgatattattggaagaaatcatggtactagattggtgaagtat 7790601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 45366114 - 45365760
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 117  Q
    ||||||| |||||||||||||  ||||||  | || ||||  | ||||||||||| ||  |||||||||| | ||||||||||||||  | || | ||||    
T  45366114 taatggggctattcattggtttgcttttcatcttggtttgcgattggatgttattatttcctttgatttaatcgaaaggaaacttttttatattcatttt 45366015  T
Q  118 ccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaa------caattgaaa 211  Q
    |||||||  ||| | | |||||||   ||||||| ||||||| |||||||||||||| | ||| | ||||||||||   |||| |      || ||||||    
T  45366014 ccagatgagtttaaccgtgaacctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaa 45365915  T
Q  212 tatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctc 311  Q
    ||||||| ||||||||||| ||||||| |||||||||||| |||||||  ||  |  ||||||||||||||  || |||||||  | | ||  |||||||    
T  45365914 tatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctc 45365815  T
Q  312 tacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtat 366  Q
    ||||||| | ||| |||||||||| ||| ||| |  || | ||||||||||||||    
T  45365814 tacaaaaagcggtgatattattggaacagatgatcttaatagattggtgaagtat 45365760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 50666561 - 50666733
Alignment:
Q  100 cttttagagatgccttttccagatggt---tttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatggg-- 194  Q
    ||||||||||||||| |||||||||||   ||||  |||| ||||||| |||||||||||||| ||||| |||| ||||||| | ||| |||||| |       
T  50666561 cttttagagatgcctcttccagatggtgattttgtccatgtacctataaattgtgatttgtgggtatttagagagtttcttaatttatcggctattgatt 50666660  T
Q  195 ----ggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
        | |||| ||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||    
T  50666661 atgtgaatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgt 50666733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 49038623 - 49038521
Alignment:
Q  161 tatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactct 260  Q
    ||||| |||||||||| ||| |||||||||||| |  ||  ||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  49038623 tatttcgagaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactct 49038524  T
Q  261 tgt 263  Q
    |||    
T  49038523 tgt 49038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 282
Target Start/End: Complemental strand, 49048334 - 49048179
Alignment:
Q  126 ttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaa 225  Q
    |||||| ||| |||||| |||||||||||||||| |||| || || ||||| ||| ||||| ||| |  |||||| | | ||||||||||||| ||||||    
T  49048334 ttttgaacattaacctacagattgtgatttgtgggtatt-ggtgagtttctcagtgtatggactaagcaggatgatatagttgaaatatgggtgatgaaa 49048236  T
Q  226 gaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatt 282  Q
    || || |||||||||||||| |||||||||||| |||| || |||| ||||| ||||    
T  49048235 gagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcatt 49048179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 37826902 - 37826633
Alignment:
Q  6 agggtcactctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactttta 105  Q
    |||||||||||  |||||| | |||||||||||  ||| ||| | |||||   || || || ||||||||| |||| ||||| ||||||||||||| |||    
T  37826902 agggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaactgtta 37826803  T
Q  106 gagatgcc--tt----ttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatggggg--- 196  Q
    ||||| ||  ||    ||||||||| |||| |  |||| |||  | ||| || ||||||| |||||||||||||||||||||||||||| |||||         
T  37826802 gagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagtt 37826703  T
Q  197 ---atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
       || | ||| || || || |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  37826702 ataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 37826633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 48864396 - 48864453
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgt 48864453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 48705281 - 48705170
Alignment:
Q  13 ctctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgc 112  Q
    |||||||||||| |||||||||||||  ||| ||| ||||||||   || |||||||||||||| |||||||||| |||||||| ||||||| || ||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgc 48705182  T
Q  113 cttttccagatg 124  Q
     ||| |||||||    
T  48705181 ttttgccagatg 48705170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 48903255 - 48903364
Alignment:
Q  148 tgtgatttgtggatatttggagaatttcttagtctatgggctatgggg---gatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgt 244  Q
    |||||||| ||| ||||||||||||||||||| ||||||||| |||     ||| | | | ||||||||||||| |||||||||||||||||||||| ||    
T  48903255 tgtgatttatgggtatttggagaatttcttagcctatgggctttggattacgataataaatttgaaatatgggtgatgaaagaatacaaagtgcatttgt 48903354  T
Q  245 cttggactaa 254  Q
    ||||||||||    
T  48903355 cttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 7765994 - 7766060
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  7765994 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgt 7766060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 7771747 - 7771813
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  7771747 atgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgt 7771813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 43596255 - 43596153
Alignment:
Q  82 gatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtc 181  Q
    |||||| | ||||| ||||| |||||||||| |||||| |||||||||||  |||| |||| | |||||||| ||||| ||||||| |||||||||||||    
T  43596255 gatttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtc 43596156  T
Q  182 tat 184  Q
    |||    
T  43596155 tat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 48870917 - 48871091
Alignment:
Q  202 acaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctc 301  Q
    ||||||||||| ||||| ||||| |||||||||||| | ||||||||||| |||||||||||  | ||| |||||| ||||| |  | | | |  | | |    
T  48870917 acaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccc 48871016  T
Q  302 caatatgctctacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    || | |||| ||||||| ||||| ||||||||||  || || |||||| |||||||||||||||||||| |||||    
T  48871017 cattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatg 48871091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 48876221 - 48876395
Alignment:
Q  202 acaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctc 301  Q
    ||||||||||| ||||| ||||| |||||||||||| | ||||||||||| |||||||||||  | ||| |||||| ||||| |  | | | |  | | |    
T  48876221 acaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccc 48876320  T
Q  302 caatatgctctacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    || | |||| ||||||| ||||| ||||||||||  || || |||||| |||||||||||||||||||| |||||    
T  48876321 cattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatg 48876395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 49044095 - 49043977
Alignment:
Q  6 agggtcactctataatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactttta 105  Q
    |||||| |||| ||||||| ||||||| |||||  ||||||  | |||||| |||||| |||||||||||| |||||||||| | |||||||||||||||    
T  49044095 agggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaactttta 49043996  T
Q  106 gagatgccttttccagatg 124  Q
    || ||  |||| |||||||    
T  49043995 gacatatctttgccagatg 49043977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 7813830 - 7813895
Alignment:
Q  198 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||||    
T  7813830 tgaaagaattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgt 7813895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 7237452 - 7237386
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  7237452 atgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 7773534 - 7773468
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||    
T  7773534 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgt 7773468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 7786816 - 7786882
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||  ||||||| ||||||||||||    
T  7786816 atgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgt 7786882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 7878735 - 7878801
Alignment:
Q  197 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||    
T  7878735 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgt 7878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 48886603 - 48886777
Alignment:
Q  202 acaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctc 301  Q
    ||||||||||| ||||| ||||| |||||||||||| | ||||||||||| |||||||||||  | ||| |||||| |||||    | | | |  | | |    
T  48886603 acaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccc 48886702  T
Q  302 caatatgctctacaaaatgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatgtcaatg 376  Q
    || | |||| ||||||| ||||| ||||||||||  || || |||||| |||||||||||||||||||| |||||    
T  48886703 cattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatg 48886777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 7800990 - 7801055
Alignment:
Q  198 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||| |||||||||||||||  ||||||| |||||||||||||||||||||| ||| ||||||||    
T  7800990 tgaaagaattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 7801055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 7908663 - 7908720
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgt 7908720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 45384592 - 45384539
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactc 259  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactc 45384539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 48861636 - 48861697
Alignment:
Q  193 ggggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaa 254  Q
    |||||||| ||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  48861636 ggggatgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48898881 - 48898918
Alignment:
Q  1 catgcagggtcactctataatgggactattcattggtt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  48898881 catgcagggtcactctataatggggctattcattggtt 48898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  207 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaag 255  Q
    |||||||||||| |||||| |||||||| |||||||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 7878048 - 7878087
Alignment:
Q  153 tttgtggatatttggagaatttcttagtctatgggctatg 192  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  7878048 tttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 48735097 - 48735058
Alignment:
Q  220 atgaaagaatacaaagtgcattcgtcttggactaagactc 259  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  48735097 atgaaagaatacaaagtgaattcgtcttggactaaaactc 48735058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 48861505 - 48861580
Alignment:
Q  89 tggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatt 164  Q
    |||||| |||||||||||||||| ||||||   ||  |||||| |||||||||| | |||||||||||||| ||||    
T  48861505 tggaaaagaaacttttagagatgtcttttctccataattttgaccatgaacctacatattgtgatttgtgggtatt 48861580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 7765806 - 7765908
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 117  Q
    ||||||| ||||||||||||| ||||  || |||||| |  |  ||||||| ||||||||||||||||||  |||||||| | | || ||||||||| ||    
T  7765806 taatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctctt 7765905  T
Q  118 cca 120  Q
    |||    
T  7765906 cca 7765908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 7823322 - 7823387
Alignment:
Q  198 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||| ||| |||||||||||  | ||||| ||||||||||||| |||||||| ||| ||||||||    
T  7823322 tgaaagaatggaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgt 7823387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 45384747 - 45384618
Alignment:
Q  63 ggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggata 162  Q
    |||||||||| |||   |||||||| | |||| |||||||||  | |||| ||| |||||||  ||| | | ||||||||  ||||||| ||||||| ||    
T  45384747 ggatgttattattgctgttgatttaatcgaaatgaaacttttttatatgcatttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggta 45384648  T
Q  163 tttggagaatttcttagtctatgggctatg 192  Q
    |||||||||||||| ||| | || ||||||    
T  45384647 tttggagaatttctcagtttttgagctatg 45384618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 48734178 - 48734215
Alignment:
Q  220 atgaaagaatacaaagtgcattcgtcttggactaagac 257  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  48734178 atgaaagaatacaaagtgcattcgtattggacaaagac 48734215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 47208238 - 47208286
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaa 254  Q
    |||||||| |||| ||||||||||||||||| || || |||||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaa 47208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 21015994 - 21016346
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctttt 117  Q
    ||||||| |||||||||||||  ||||||| |||||||| |||||| | |||||  ||| |||||||||  | ||||| |||||||| || ||| ||||     
T  21015994 taatggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttg 21016093  T
Q  118 ccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatggg 217  Q
    || |||| | | || |||||||||||| |||||||||||||| |||| || |||||| | ||| ||||| ||||||    ||| | | ||||||||||||    
T  21016094 ccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtgatatagttgaaatatggg 21016193  T
Q  218 ttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctacaaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   || |||||||||| ||||  || ||  ||     |||||||||| | ||||||    
T  21016194 ttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcccactcgttatttctctccaatatgttgtacaaa 21016293  T
Q  318 atgtggtcatattattgggacaaatggtggtactggattggtgaagtatgatg 370  Q
    | ||||| |||||||||| ||| |||||    |||||||||||| ||||||||    
T  21016294 aagtggtgatattattggaacagatggtacagctggattggtgaggtatgatg 21016346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 21979517 - 21979420
Alignment:
Q  26 ctattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagat 123  Q
    |||||||||||||  |||||||  ||||||| ||  ||  ||||||||||| |||||||||| | |||||||||||||| ||||| ||| ||||||||    
T  21979517 ctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcctttgatttaatagaaaggaaactttttgagatccctcttccagat 21979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 21979325 - 21979278
Alignment:
Q  209 aaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaga 256  Q
    |||||||||| ||||||||||||||||||| ||| ||||||| |||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataaga 21979278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  212 tatgggttatgaaagaatacaaagtgcattcgtcttggact 252  Q
    ||||||| ||||||||||||||| ||||||| |||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 9119928 - 9120201
Alignment:
Q  19 aatgggactattcattggttctcttttcgccatgat---ttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctt 115  Q
    |||||| |||||||||||||| ||||||| ||||||   ||   || |||| ||||| ||| |||||||||| |  ||| | ||||||| ||||| |||     
T  9119928 aatgggtctattcattggttcgcttttcgtcatgatcatttacaaaaggatcttattcttgcctttgatttaatcaaaacggaactttttgagattcctc 9120027  T
Q  116 ttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatggggg------atgaaacaattga 209  Q
    | |||  || | ||||| ||||| ||| | |||||||| ||||| |||||||||||||||| ||| ||||||||||||         |||| ||| ||||    
T  9120028 tcccaattgatattgattatgaagctacaaattgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttga 9120127  T
Q  210 aatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggcattt 283  Q
    ||||||||| ||||||||||||||||||||||| |||||||  || |||||||| || |||||||| |||||||    
T  9120128 aatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgttttgtctattgacggcattt 9120201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 179222 - 179462
Alignment:
Q  18 taatgggactattcattggttctcttttcgccatgat---ttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcct 114  Q
    ||||||| |||||||||||||||||||||| ||||||   ||   ||||||| ||||| ||| ||||||| || |  ||||| ||||||| ||||| |||    
T  179222 taatggggctattcattggttctcttttcgtcatgatcatttacaaatggatcttattcttgcctttgatctaatcaaaagggaactttttgagattcct 179321  T
Q  115 tttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaa------caattg 208  Q
     | |||  || | ||||  ||||| ||| | |||||||| | ||| |||||||| ||||||| ||| ||||||||||||   |||| |      || |||    
T  179322 ctcccaattgatattgactatgaagctacaaattgtgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttg 179421  T
Q  209 aaatatgggttatgaaagaatacaaagtgcattcgtcttgg 249  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  179422 aaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 263
Target Start/End: Complemental strand, 42562174 - 42561976
Alignment:
Q  65 atgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatt 164  Q
    |||||||||||| |||| |||||  ||||||||||||| ||||||| | | |||||  || | || || || |  | | || ||||| ||| ||| ||||    
T  42562174 atgttattgttgcctttcatttaacggaaaggaaacttctagagattcttcttccaattgatattaattataattccaaaggttgtggtttttgggtatt 42562075  T
Q  165 tggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    | ||| |||||| |||||||||  | || |||| || |   |||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  42562074 tagaggatttctcagtctatggattttgagggacgataatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgt 42561976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 29696600 - 29696671
Alignment:
Q  209 aaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatggca 280  Q
    |||||||||| ||| || ||||||| ||||| || ||||||||||||||||||||| | ||| |||||||||    
T  29696600 aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatggca 29696671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 29688490 - 29688544
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactct 260  Q
    ||||||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||    
T  29688490 ttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactct 29688544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 29688336 - 29688394
Alignment:
Q  58 tcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttt 116  Q
    |||||| ||||||||||||| ||| |||||  ||||||||||||| ||||| |||||||    
T  29688336 tcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt 29688394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 29696401 - 29696490
Alignment:
Q  19 aatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagag 108  Q
    |||||| ||||||| |||||  |||||||  ||||| | ||||||  ||||||||||| |||| ||||| | |||||||||||| |||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagag 29696490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 29712141 - 29712069
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcttatctattgatgg 278  Q
    ||||||||||||| ||| || ||||||| |||   || |||||||||||||||||||| || ||| |||||||    
T  29712141 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatgg 29712069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 4030443 - 4030324
Alignment:
Q  251 ctaagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctacaaaatgtggtcatattattgggacaaatggtggtac 350  Q
    |||||||||||||  | |||||||||||||||| |||| | |||  | | ||||| |||||||||| | ||||| |||||||||| ||| ||||||||||    
T  4030443 ctaagactcttgttctgtctattgatggcatttccattaagtacttttccccaatgtgctctacaataagtggtgatattattggaacatatggtggtac 4030344  T
Q  351 tggattggtgaagtatgatg 370  Q
    || |||||||||||||||||    
T  4030343 tgaattggtgaagtatgatg 4030324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 4031626 - 4031577
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaag 255  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4031626 ttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 4962385 - 4962244
Alignment:
Q  50 atgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaac----ctatag 145  Q
    ||||||| ||| ||||||||||| ||| |||||||||| ||||||||||| | |||||||||||| ||||  ||| ||||||  ||||||    || ||     
T  4962385 atgatttatcagtggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaa 4962286  T
Q  146 attgtgatttgtggatatttggagaatttcttagtctatggg 187  Q
     || || ||||||| |||||||||||||||| ||||||||||    
T  4962285 gttatggtttgtgggtatttggagaatttctcagtctatggg 4962244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 12200553 - 12200677
Alignment:
Q  62 tggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggat 161  Q
    |||| |||||||||| |||||||||| ||||||||||| |  ||||||| | | ||||||||| |||  | ||||  | |||  ||| || ||||||| |    
T  12200553 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12200652  T
Q  162 atttggagaatttcttagtctatgg 186  Q
    |||||||||||||||||||||||||    
T  12200653 atttggagaatttcttagtctatgg 12200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 12444981 - 12445105
Alignment:
Q  62 tggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggat 161  Q
    |||| |||||||||| |||||||||| ||||||||||| |  ||||||| | | ||||||||| |||  | ||||  | |||  ||| || ||||||| |    
T  12444981 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12445080  T
Q  162 atttggagaatttcttagtctatgg 186  Q
    |||||||||||||||||||||||||    
T  12445081 atttggagaatttcttagtctatgg 12445105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 12195535 - 12195597
Alignment:
Q  62 tggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatg 124  Q
    |||| |||||||||| |||||||||| ||||||||||| | |||||||| ||| |||||||||    
T  12195535 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatg 12195597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 12439963 - 12440025
Alignment:
Q  62 tggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatg 124  Q
    |||| |||||||||| |||||||||| ||||||||||| | |||||||| ||| |||||||||    
T  12439963 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatg 12440025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 15349244 - 15349301
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||| |||||||||||||||||| | || |||||||| |||| ||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgt 15349301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 4962219 - 4962161
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcat---tcgtcttggactaagactctt 261  Q
    ||||||||||||| ||||||||||||||| |||||   ||||| |||||||||||||||    
T  4962219 ttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactctt 4962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 4031789 - 4031710
Alignment:
Q  26 ctattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactttta 105  Q
    |||||||||||||  ||||||| |||||||| || ||  ||||||| |||| ||||||||||  |||||| |||||||||    
T  4031789 ctattcattggttggcttttcgtcatgatttatcgataaatgttatcgttgcctttgatttaacggaaagaaaactttta 4031710  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 15349100 - 15349214
Alignment:
Q  68 ttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttgg 167  Q
    |||||||||  |||||||||   ||||||||||| || |||||||||  |||||||| |||||| |||||  ||   ||||||| ||||||| | |||||    
T  15349100 ttattgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttgg 15349199  T
Q  168 agaatttcttagtct 182  Q
     |||||| |||||||    
T  15349200 cgaattttttagtct 15349214  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 12195685 - 12195742
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||  |||||||||||||||   || || ||||||||||||||||||||    
T  12195685 ttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 12200703 - 12200760
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||  ||||||  ||||||| ||| |||||||||||| |||||||||||    
T  12200703 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12200760  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 12440113 - 12440170
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||  |||||||||||||||   || || ||||||||||||||||||||    
T  12440113 ttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 12445131 - 12445188
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||||||  ||||||  ||||||| ||| |||||||||||| |||||||||||    
T  12445131 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12445188  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 48884185 - 48884242
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||    
T  48884185 ttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgt 48884242  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 263
Target Start/End: Original strand, 24340634 - 24340829
Alignment:
Q  71 ttgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggaga 170  Q
    |||||| |||||| ||||| |||||||||||| ||||||| ||| | ||||||| |||||| ||||    ||  | ||||| ||| ||| ||| | |||     
T  24340634 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24340733  T
Q  171 atttcttagtctatgggctatgggggat---gaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||||| |||||||||| ||||| ||||   || ||  |||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||    
T  24340734 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24340829  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 263
Target Start/End: Original strand, 24352999 - 24353194
Alignment:
Q  71 ttgttggctttgatttagtggaaaggaaacttttagagatgccttttccagatggttttgatcatgaacctatagattgtgatttgtggatatttggaga 170  Q
    |||||| |||||| ||||| |||||||||||| ||||||| ||| | ||||||| |||||| ||||    ||  | ||||| ||| ||| ||| | |||     
T  24352999 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24353098  T
Q  171 atttcttagtctatgggctatgggggat---gaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||||| |||||||||| ||||| ||||   || ||  |||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||    
T  24353099 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24353194  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 24367531 - 24367583
Alignment:
Q  211 atatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgt 24367583  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 24310577 - 24310634
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| |||||||| |||||||||||||||||||| || ||||||| ||| ||||||||    
T  24310577 ttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgt 24310634  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 24416139 - 24416196
Alignment:
Q  206 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    |||| |||||||| |||||||||||||||| ||| || ||||||||||| ||||||||    
T  24416139 ttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgt 24416196  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 24323139 - 24323188
Alignment:
Q  214 tgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 263  Q
    ||||| |||||||||||||||||||| || |||| |||||| ||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgt 24323188  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 29350829 - 29350943
Alignment:
Q  252 taagactcttgtcttatctattgatggcatttgcattcaatacgatcctccaatatgctctacaaaatgtggtcatattattgggacaaatggtggtact 351  Q
    ||||||||||||  | |||||||||||||||| || | | ||   | | ||||| |||||||||| | ||||| |||||||||| ||  |||||||||||    
T  29350829 taagactcttgttctgtctattgatggcatttccaataagtattttgccccaatgtgctctacaataggtggtgatattattggaacggatggtggtact 29350928  T
Q  352 ggattggtgaagtat 366  Q
    | |||||||||||||    
T  29350929 gaattggtgaagtat 29350943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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