View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20470_low_11 (Length: 355)
Name: NF20470_low_11
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 20793332 - 20793537
Alignment:
| Q |
18 |
tggctatgtgcatagaagaaggaggga-atcaatagaatataaatgagtttggaggatgtctaataagagaggagaggttggagatgttccgtaaggatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20793332 |
tggctatgtgcatagaagaaggagggggatcaatagaatataattgagtttggaggatgtctaataagagaggagaggttggagatattccggaaggatc |
20793431 |
T |
|
| Q |
117 |
ttaaaattttagtgaaaatgggggagtgagaatctgagattacaataaagtgaaaggccgaacatttattttgagaaattaaaaactctaaatactgatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20793432 |
ttaaaattttagtgaaaatgggggagtgagaatctgagattacaataaagtgaaaggccgaacatttattttgagaaat--aaaactctaaatactgatt |
20793529 |
T |
|
| Q |
217 |
taagaaag |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
20793530 |
taagaaag |
20793537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 20793564 - 20793655
Alignment:
| Q |
246 |
ttttaaactttattaacttcttctttccaagtcgagcttacttgatgtgcaaaatatatttcaaccttttgttattgttttaagaatatgct |
337 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20793564 |
ttttaaactttattaacttcttctttgcaagtcgagcttacttgatgtgcaaaatatatttcaaccttttgttattgttttaagaatatgct |
20793655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University