View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_low_15 (Length: 325)

Name: NF20470_low_15

Description: NF20470

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20470_low_15

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 160; E-Value: 3e-85

Query Start/End: Original strand, 157 - 316

Target Start/End: Complemental strand, 52762316 - 52762157

Alignment:

Q	157	cattttatgccgcaagatggaagtagtggcatgatttgagtttgataatagcatattcaggccatgcattcttcccttattcattccaattttaaaatcc	256	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52762316	cattttatgccgcaagatggaagtagtggcatgatttgagtttgataatagcatattcaggccatgcattcttcccttattcattccaattttaaaatcc	52762217	T

Q	257	aaatgcaaagttaacgttattattctcccacaatggatcttttgcgatcagaacctatgc	316	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52762216	aaatgcaaagttaacgttattattctcccacaatggatcttttgcgatcagaacctatgc	52762157	T

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Target: chr3; HSP #2

Raw Score: 53; E-Value: 2e-21

Query Start/End: Original strand, 17 - 69

Target Start/End: Complemental strand, 52762463 - 52762411

Alignment:

Q	17	cattaattccttcaaaaaatgcatctgagaattattggttataaactatgaat	69	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52762463	cattaattccttcaaaaaatgcatctgagaattattggttataaactatgaat	52762411	T

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