View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_16 (Length: 324)
Name: NF20470_low_16
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 47291968 - 47292261
Alignment:
| Q |
16 |
aatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttatttaacatgaatcacgacattacaaactacaacaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47291968 |
aatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgacattacaaactacaacaaac |
47292067 |
T |
|
| Q |
116 |
tataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292068 |
tataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcag |
47292167 |
T |
|
| Q |
216 |
agggcaaacaaattggtacattcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292168 |
agggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
47292261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 47298590 - 47298868
Alignment:
| Q |
39 |
ctttcattatcattatatagcacacaagcccccaactttatttaacatgaatcacgaca--------ttacaaactacaacaaactataaggtagacatc |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47298590 |
ctttcattatcattatatagcacacaagcccccaactttatttaacagcaatcacgacagtacaattttacaaactacaacaaactataaggtagacatc |
47298689 |
T |
|
| Q |
131 |
gcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg |
230 |
Q |
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| T |
47298690 |
gcaaaactaggagcactcaatgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg |
47298789 |
T |
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| Q |
231 |
gtacattcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
309 |
Q |
| |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |
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| T |
47298790 |
gtaacatcaaagtttcttctccttttatattcttatatgggacgatataggttgctccaggaaaaggtccagccccacc |
47298868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 47243241 - 47243159
Alignment:
| Q |
151 |
tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
233 |
Q |
| |
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| T |
47243241 |
tgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta |
47243159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 47268143 - 47267988
Alignment:
| Q |
153 |
taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtacattcaaagtttcttctcc |
252 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | ||| | ||| ||||||||| |
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| T |
47268143 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
47268044 |
T |
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| Q |
253 |
atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac |
308 |
Q |
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| || |||||||| ||||| |||||||| || ||||||||| | |||||||||| |
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| T |
47268043 |
ttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac |
47267988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 47257409 - 47257286
Alignment:
| Q |
110 |
acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
209 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| |
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| T |
47257409 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat |
47257310 |
T |
|
| Q |
210 |
cttcagagggcaaacaaattggta |
233 |
Q |
| |
|
|||||| ||||| |||||||||| |
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| T |
47257309 |
cttcaggaggcaagcaaattggta |
47257286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 47284150 - 47284043
Alignment:
| Q |
111 |
caaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc |
210 |
Q |
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|||||||||||||||| || ||||| || || || ||| |||||| | |||||| ||||||| ||||| ||| ||||||| ||||||||||||||| | |
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| T |
47284150 |
caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac |
47284051 |
T |
|
| Q |
211 |
ttcagagg |
218 |
Q |
| |
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|||||||| |
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| T |
47284050 |
ttcagagg |
47284043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 47279517 - 47279450
Alignment:
| Q |
151 |
tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagg |
218 |
Q |
| |
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|||||| | |||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||||| |
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| T |
47279517 |
tgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagagg |
47279450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 32731949 - 32731828
Alignment:
| Q |
110 |
acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
209 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
32731949 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat |
32731850 |
T |
|
| Q |
210 |
cttcagagggcaaacaaattgg |
231 |
Q |
| |
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|||||| |||||| |||||||| |
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| T |
32731849 |
cttcagggggcaagcaaattgg |
32731828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 20519904 - 20519835
Alignment:
| Q |
164 |
tggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
233 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||||||| |
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| T |
20519904 |
tggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggta |
20519835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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