View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_19 (Length: 311)
Name: NF20470_low_19
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 39783848 - 39784128
Alignment:
| Q |
13 |
aaaataactctcggtgaaattttaaattttgtctgctgtgttattgggttgattattcattttatatcttaatatctgtactgcatttgtctccatatcc |
112 |
Q |
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| T |
39783848 |
aaaataactcccggtgaaattttaaattttgtctgctgtgttattgggttgattattcattttatatcttaatatctgtactgcatttgtctctatatcc |
39783947 |
T |
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| Q |
113 |
ctgttgggcaatgtgataggtgttacaaacaaaatagagttaattttaaaatttcctgattgtattgatcagctattaaaaactcactggggttgcagaa |
212 |
Q |
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| T |
39783948 |
ctgttgggcaatgtgatgggtgttacaaacaaaatagagttaattttaaaatttcctgattgtattgatcagctattaaaaactcactggggttgcagaa |
39784047 |
T |
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| Q |
213 |
tatttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttggatactattgactcaga |
293 |
Q |
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| T |
39784048 |
tctttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttagatactattgacacaga |
39784128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 39794945 - 39795035
Alignment:
| Q |
205 |
ttgcagaatatttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttggatactattgactcagaac |
295 |
Q |
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| T |
39794945 |
ttgcagaatatttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttggatactattgactcagaac |
39795035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 39790539 - 39790638
Alignment:
| Q |
196 |
tcactggggttgcagaatatttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttggatactattgactcagaac |
295 |
Q |
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| T |
39790539 |
tcactggggttgcagaatctttttgagatgcatattaggaagggtggaagtagtcaaaagatgtctcataataaatggctgaatactattgactcggaac |
39790638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 39776612 - 39776700
Alignment:
| Q |
200 |
tggggttgcagaatatttttgagatacacattaggaggggtggaagcagtcaaaatatgaaccatagtgaatggttggatactattgac |
288 |
Q |
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| T |
39776612 |
tggggttgcagaatctttttatggtacataaaagaaagggtggaagcagtaaaacaatgtatcatagtgaatggttggatactattgac |
39776700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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