View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_2 (Length: 522)
Name: NF20470_low_2
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 13115632 - 13116135
Alignment:
| Q |
1 |
tagtgatgcaaaatttttggaatcaaaagtcgaaggaaaatttagagctgaaattcgtagctgcaagtaatcatgtatgcttttcttgcagttcacacac |
100 |
Q |
| |
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|||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13115632 |
tagtgaagcagaattttcggaatcaaaagtcgaaggaaaatttggagctgaaattcgtagctgcaattaatcatgtatgcttttcttgcagttcacacac |
13115731 |
T |
|
| Q |
101 |
ttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctttcaacttcgtcaccaaatggagtcaaatactag |
200 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
13115732 |
ttcaaatgtggaggactctctgtgggaatgagttgggctcacatccttggagatgcattttcagcttttaacttcatcagcaaatggagtcaaatactag |
13115831 |
T |
|
| Q |
201 |
ctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattctgtttctgacaatcccatttccatcaaaagggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13115832 |
ctggccaagctccaccaaaatctcttcacaagcaaaatctcacaaaacctcaattctcattaaattctgtttctgacaatcccatttccatcaaaagggc |
13115931 |
T |
|
| Q |
301 |
aacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcaccatttggtaatacca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13115932 |
aacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcaccatttggtaacacca |
13116031 |
T |
|
| Q |
401 |
tccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcacaaataagaggagattttggacagaggg |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
13116032 |
tccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcgcaaataagaggagattttggacagacgg |
13116131 |
T |
|
| Q |
501 |
ttgt |
504 |
Q |
| |
|
|||| |
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|
| T |
13116132 |
ttgt |
13116135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 90 - 504
Target Start/End: Original strand, 46010844 - 46011267
Alignment:
| Q |
90 |
agttcacacacttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctttcaacttcgtcaccaaatggag |
189 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| | || ||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||| |
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|
| T |
46010844 |
agttcacattcttcaaatgtggaggactctcagtgggactgagctgggctcacattcttggagatgcattttcagctcgtaacttcatcaccaagtggag |
46010943 |
T |
|
| Q |
190 |
tcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattctgtttctgacaatcccatttcc |
289 |
Q |
| |
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||| | |||||||| |||||||||||||||||||| |||| || ||||||||| ||||||||||||| || |||||||||| ||| |||||||||||| |
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|
| T |
46010944 |
tcacaccctagctggtcaagctccaccaaaatctctccacatgccaaatctcactaaacctcaattcttatcgaattctgtttatgataatcccatttcc |
46011043 |
T |
|
| Q |
290 |
atcaaaagggcaacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcaccatt |
389 |
Q |
| |
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|| |||||||||||| |||| ||||||||||| ||| | | | ||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
46011044 |
attaaaagggcaacaacaattgaagaatattggctcgctgccactgatagttatgtagctactcacacttttcacatcacttccaaacaacttcatcatt |
46011143 |
T |
|
| Q |
390 |
tggtaataccatccacaacatc---------taacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcacaaataag |
480 |
Q |
| |
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|| ||| | |||||||| || | || ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46011144 |
tgttaacaacatccacatcaaccaatatcaatatcaataccaagacaaagtattttgaaattatttcagctatgatttggaaatgtataggacaaataag |
46011243 |
T |
|
| Q |
481 |
aggagattttggacagagggttgt |
504 |
Q |
| |
|
|||| | ||||||| |||||||| |
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|
| T |
46011244 |
aggaaactttggacctagggttgt |
46011267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 68 - 483
Target Start/End: Original strand, 15923876 - 15924290
Alignment:
| Q |
68 |
taatcatgtatgcttttcttgcagttcacacacttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctt |
167 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15923876 |
taattatgtatg-ttttcttgcagttcacgagtttcaaatgtgggggactctctgttggactaagttgggctcacatccttggagatgcattttcagctt |
15923974 |
T |
|
| Q |
168 |
tcaacttcgtcaccaaatggagtcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattc |
267 |
Q |
| |
|
| || ||| |||||||||||||||| ||||||||||| ||| | | ||||||||||||||||| | |||||| ||||||||||||| || |||| |
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|
| T |
15923975 |
ttaatttcatcaccaaatggagtcacatactagctggtcaatcccaaccaaaatctcttcacattccaaatcttgtcaaacctcaattcctatccaattt |
15924074 |
T |
|
| Q |
268 |
tgtttctgacaatcccatttccatcaaaagggcaacatg-tgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacat |
366 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| | || ||| ||||| |||||||||||||||| | || | || |||| ||| |||||| |||||||| |
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|
| T |
15924075 |
tgtttttgataatcctatttccatcaaaaatg-aaaatgttgttggggaatattggcttgctgcaaatgattgttatgtccctagtcacacatttcacat |
15924173 |
T |
|
| Q |
367 |
cacttccaaccaacttcaccatttggtaataccatccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgt |
466 |
Q |
| |
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|||||| | |||||||||||||||||||| | || ||| | | || ||||| | | || || |||||||||||||||||||||| ||| ||||||||| |
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|
| T |
15924174 |
cacttctagccaacttcaccatttggtaaaaacaaccaaatctattaccaataccgatactaagtattttgaaattatttcagctacgatatggaaatgt |
15924273 |
T |
|
| Q |
467 |
atagcacaaataagagg |
483 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
15924274 |
atagcacaaataagagg |
15924290 |
T |
|
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