View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_21 (Length: 300)
Name: NF20470_low_21
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 34397370 - 34397094
Alignment:
| Q |
16 |
caccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaatacctcagaattcttactcctagctgc |
115 |
Q |
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| T |
34397370 |
caccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaatacctcagaattcttactcctagctgc |
34397271 |
T |
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| Q |
116 |
agcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactccaaatcaccagcagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397270 |
agcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactccaaatcaccagcagaa |
34397171 |
T |
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| Q |
216 |
gcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgttgctgtttcttctcactc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34397170 |
gcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgtttctgtttcttcacactc |
34397094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 248
Target Start/End: Original strand, 38831511 - 38831669
Alignment:
| Q |
90 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
189 |
Q |
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| T |
38831511 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
38831610 |
T |
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| Q |
190 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatcca |
248 |
Q |
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| T |
38831611 |
aaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatcca |
38831669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 7997069 - 7997140
Alignment:
| Q |
97 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
168 |
Q |
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| T |
7997069 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
7997140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 8021733 - 8021662
Alignment:
| Q |
97 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
168 |
Q |
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||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
8021733 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
8021662 |
T |
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