View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_22 (Length: 282)
Name: NF20470_low_22
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 42042180 - 42042436
Alignment:
| Q |
18 |
tgaggaatgtttgtcaattgatcaaatgaaattgcataacacttttaataaacaccacttaattattcactaacatatgcttatacataaatgcgcatgc |
117 |
Q |
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| T |
42042180 |
tgaggaatgtttgtcaattgatcaaatgaaattgcataacacttttaataaaccccacttaattattcactaacatatgcttatacataaatgcgcatgc |
42042279 |
T |
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| Q |
118 |
atatatatgtttgcttgttttggccttcatttcaaaccatgaaagtcaaaggtggcatgtgctagaaagtacttttgtcttctcatatatgaaaatcaaa |
217 |
Q |
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| T |
42042280 |
atatatatgtttgcttgttttggctttcatttcaaaccatgaaagtcaaaggtggcatgtgctagaaag-----ttgtcatc---catatgaaaatcaaa |
42042371 |
T |
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| Q |
218 |
ttctgtttctgtcaagtagcaagcatgttgtctagctctttcacatgtactacactcctagtcct |
282 |
Q |
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| T |
42042372 |
ttctgtttctgtcaagtagcaagcatgttgtctagctctttcacatgtactacactcctagtcct |
42042436 |
T |
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