View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_23 (Length: 270)
Name: NF20470_low_23
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 3039414 - 3039177
Alignment:
| Q |
13 |
gagatgaagattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttga |
112 |
Q |
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| T |
3039414 |
gagatgaagattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtctttttcaggaaacttgattttga |
3039315 |
T |
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| Q |
113 |
gtttaacaagtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttaga |
212 |
Q |
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| T |
3039314 |
gtttaacaaggttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttaga |
3039215 |
T |
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| Q |
213 |
ataaaggtggataaggttaggcttggaaatcttgatag |
250 |
Q |
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| T |
3039214 |
ataaaggttgataaggttaggtttggaaatcttgatag |
3039177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 3021084 - 3020855
Alignment:
| Q |
21 |
gattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaaca |
120 |
Q |
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| T |
3021084 |
gattcaaaagggttatatcaaaccatgtttttgaagccttctgaagatggagcagaaagagaacttttatttttcaagaaacttgattttgagtttaata |
3020985 |
T |
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| Q |
121 |
agtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaaggt |
220 |
Q |
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| T |
3020984 |
aggttaatgcattttataggaagatggtgaaggaagttgttgatgaagctgaggagttaagtaaacaaatgaactttcttattgcttttagaataaaggt |
3020885 |
T |
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| Q |
221 |
ggataaggttaggcttggaaatcttgatag |
250 |
Q |
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| T |
3020884 |
tgataaggttgggtttggaaatgttgatag |
3020855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 3011024 - 3010819
Alignment:
| Q |
23 |
ttcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaacaag |
122 |
Q |
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|||||||| | |||||||||||| ||||||||| |||| ||||||||||||||||| |||||||| ||||| | |||||||||| |||||||||||||| |
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| T |
3011024 |
ttcaaaagggatgtatcaaaccatgtttttaaagccttctgaagatggagcagaaatagatcttgagtttttcaagaaacttgatattgagtttaacaag |
3010925 |
T |
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| Q |
123 |
tttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaaggtgg |
222 |
Q |
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| T |
3010924 |
gttaatgcattttataagaagatggtgaaggaagttgttcatgaagctgatgagttaagtgaacaaatgaattttcttattgcttttagaataaaggttg |
3010825 |
T |
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| Q |
223 |
ataagg |
228 |
Q |
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|||||| |
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| T |
3010824 |
ataagg |
3010819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 20058082 - 20058315
Alignment:
| Q |
17 |
tgaagattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagttt |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |
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| T |
20058082 |
tgaagattcaaaagtgttgtatcaaaccatgtttttaaacccttatgaagatggagcagagagagatcttatctttttcaggaaacttgatgttgagttt |
20058181 |
T |
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| Q |
117 |
aacaagtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataa |
216 |
Q |
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| T |
20058182 |
aacaaggttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataa |
20058281 |
T |
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| Q |
217 |
aggtggataaggttaggcttggaaatcttgatag |
250 |
Q |
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||||||||||||| | || ||||||||||||| |
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| T |
20058282 |
aggtggataaggtcgtggttagaaatcttgatag |
20058315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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