View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_26 (Length: 236)
Name: NF20470_low_26
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35357992 - 35358210
Alignment:
| Q |
1 |
atgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35357992 |
atgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatg |
35358091 |
T |
|
| Q |
101 |
agttccgcatcacaatcaccatttctacttttcaaggctaactcagcaggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35358092 |
agttccgcatcacaatcaccatttctacttttcaaggctaactcagcaggtgcacaccccattggtcctgtgcccgtaacaagaaccctacgagctccca |
35358191 |
T |
|
| Q |
201 |
aatcataaagtctctgcat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
35358192 |
aatcataaagtctctgcat |
35358210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 35376572 - 35376787
Alignment:
| Q |
3 |
gtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatgag |
102 |
Q |
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|||||||| ||||||||||||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
35376572 |
gtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatcatttcgacaagttgtggattatataaggaggcagctctcacgag |
35376671 |
T |
|
| Q |
103 |
ttccgcatcacaatcaccatttctacttttcaaggctaactcagcaggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaa |
202 |
Q |
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|||| ||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
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| T |
35376672 |
ttccacatcacaatcaccatttctacttctcaaagctaactctgcaggtacacaccccattggtcccgtgcccgttacaagaaccttacgacctcccaaa |
35376771 |
T |
|
| Q |
203 |
tcataaagtctctgca |
218 |
Q |
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||||||||| |||||| |
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| T |
35376772 |
tcataaagtttctgca |
35376787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 35365026 - 35365145
Alignment:
| Q |
1 |
atgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagctctcatg |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||||||||| ||||||||| | ||||||||| |||| |||| ||| |||||| || ||||| |||| | |
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| T |
35365026 |
atgtgcagtaatagcaatgaagacatcagcaccaatctctgtgttgagttctttgatcatttcgacaaattgtcgatcatataaagaggcagcactcacg |
35365125 |
T |
|
| Q |
101 |
agttccgcatcacaatcacc |
120 |
Q |
| |
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||||| ||||||||||||| |
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| T |
35365126 |
agttcaacatcacaatcacc |
35365145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 35354323 - 35354372
Alignment:
| Q |
44 |
ttgagttgtgtgatcatttgaacaagttgtggattatataaggacgcagc |
93 |
Q |
| |
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||||||| |||||||| |||||||||| |||||| |||||||||||||| |
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| T |
35354323 |
ttgagttctgtgatcaactgaacaagttttggattgtataaggacgcagc |
35354372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 35365186 - 35365246
Alignment:
| Q |
158 |
cccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgca |
218 |
Q |
| |
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|||||||||||| ||||| | |||||||| ||||| ||||||||||||||| | |||||| |
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| T |
35365186 |
cccattggtcccatgcccattacaagaacattacgacctcccaaatcataaaatttctgca |
35365246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 48084851 - 48084781
Alignment:
| Q |
149 |
ggtgcacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgcat |
219 |
Q |
| |
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|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
48084851 |
ggtgcacaccccattggtcctgttcccgttacaagaaccctacgagctcccaaatcataaagcctctgcat |
48084781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 48102074 - 48102009
Alignment:
| Q |
153 |
cacaccccattggtcccgtgcccgtaacaagaaccctacgagctcccaaatcataaagtctctgca |
218 |
Q |
| |
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||||||||| |||||| ||||| || |||||||| ||||||||||| | |||||| |||||||||| |
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| T |
48102074 |
cacaccccaatggtccggtgcctgtcacaagaactctacgagctcctatatcatatagtctctgca |
48102009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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