View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_low_3 (Length: 492)

Name: NF20470_low_3
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_low_3
NF20470_low_3
[»] chr3 (10 HSPs)
chr3 (9-83)||(5356531-5356605)
chr3 (9-83)||(5363173-5363247)
chr3 (9-83)||(5368389-5368463)
chr3 (9-83)||(5374943-5375017)
chr3 (9-68)||(5369222-5369281)
chr3 (436-474)||(8400155-8400193)
chr3 (258-302)||(5362958-5363002)
chr3 (258-302)||(5368174-5368218)
chr3 (328-388)||(5368897-5368957)
chr3 (258-302)||(7178499-7178543)
[»] chr8 (1 HSPs)
chr8 (236-308)||(30054738-30054810)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5356605 - 5356531
Alignment:
Q  9 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 83  Q
    ||||| |||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||| ||||||||    
T  5356605 gaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaat 5356531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5363247 - 5363173
Alignment:
Q  9 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 83  Q
    ||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| ||| |||||||||    
T  5363247 gaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaat 5363173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5368463 - 5368389
Alignment:
Q  9 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 83  Q
    ||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| ||| |||||||||    
T  5368463 gaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaat 5368389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 5375017 - 5374943
Alignment:
Q  9 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 83  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||  ||| |||||||||    
T  5375017 gaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaat 5374943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 5369281 - 5369222
Alignment:
Q  9 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctga 68  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  5369281 gaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctga 5369222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 8400155 - 8400193
Alignment:
Q  436 gacaattgagagaattcggaaataaaattttgcgataaa 474  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8400155 gacaattgagagaattcggaaataaaattttgcgataaa 8400193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 5363002 - 5362958
Alignment:
Q  258 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 302  Q
    |||||||| |||||||| || |||||||||||||||||| |||||    
T  5363002 atagttaagttgacaagcgttgtacttgatatacaaagactttgt 5362958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 5368218 - 5368174
Alignment:
Q  258 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 302  Q
    |||||||| |||||||| || |||||||||||||||||| |||||    
T  5368218 atagttaagttgacaagcgttgtacttgatatacaaagactttgt 5368174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 5368957 - 5368897
Alignment:
Q  328 gaatgaccaaagtatgcaactggttaaaggaagagaagggctcagcgcaaccatcatcacc 388  Q
    |||||| |||||||| ||||| ||| ||||  |||||||| ||||| ||||||||||||||    
T  5368957 gaatgatcaaagtattcaacttgttcaaggttgagaagggttcagcacaaccatcatcacc 5368897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 7178543 - 7178499
Alignment:
Q  258 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 302  Q
    |||||||||||||||||||||  |||||||||||| |||| ||||    
T  7178543 atagttaaattgacaagtgtgaaacttgatatacatagaacttgt 7178499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 30054738 - 30054810
Alignment:
Q  236 ggtataaaatccatgtccagaaatagttaaattgacaagtgtggtacttgatatacaaagaatttgtacatcc 308  Q
    ||||| ||||||||  ||| | ||||| |||||||||||||||  |||||||||||||||| ||| |||||||    
T  30054738 ggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcc 30054810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University