View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20470_low_32 (Length: 210)
Name: NF20470_low_32
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 41795720 - 41795547
Alignment:
| Q |
16 |
atgaacattgatggaaataattatagagagaagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795720 |
atgaacattgatggaaataattatagagagaagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctag |
41795621 |
T |
|
| Q |
116 |
accctgaaaggaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795620 |
accctgaaaggaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaat |
41795547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 26932144 - 26932287
Alignment:
| Q |
46 |
aagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaaggaagatgaagctttcaagag |
145 |
Q |
| |
|
||||| ||| ||||||| ||| | ||||| || |||||||||| ||||| ||||| || || || ||||||||| ||||||||||||||||||| | | |
|
|
| T |
26932144 |
aagaaaaagcgattaacgagtgaacagatggaatcactggagagtagttttcaagaggagatcaaactagaccctcaaaggaagatgaagctttccaagg |
26932243 |
T |
|
| Q |
146 |
agctagggctccaacctcgccaaattgctgtttggttccaaaat |
189 |
Q |
| |
|
|| ||||||| || ||||| ||||||||| |||||||||||||| |
|
|
| T |
26932244 |
agttagggctacagcctcgtcaaattgctatttggttccaaaat |
26932287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University