View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_5 (Length: 478)
Name: NF20470_low_5
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Complemental strand, 34600657 - 34600212
Alignment:
| Q |
17 |
tgtagagatatggaatatgaaactcaaaactgcaactttattgattaaacatagactattaaatagtcaaaacaattggaaactgaaaagctataaaata |
116 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
34600657 |
tgtagagatatggaatataaaactcaaaactgctgctttattgataaaatatagactattaaatagtcaaaacaactagaaactgaaaagctataaaatg |
34600558 |
T |
|
| Q |
117 |
gcccactaaaacaatactcacacgactgaatgaaatgtgaaactgcttcctaaagactaggacaaataaagacagcaatagcataattcctaacatatag |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
34600557 |
gcccactaaaacaatactcaaacgactgaatgaaatgtgaaactacttcctaaagactaggacaaataaagacaacaataacataattcctaacatatag |
34600458 |
T |
|
| Q |
217 |
caacagactaaacagcagtaacaaatatcttttcattccctcccttaaactagtagcattttgaacctagtttacttcagtgtaatcaagcatccccatc |
316 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34600457 |
aaacagactaa-cggcagtaacaaatatcttttcattccctcccttaaactagtagcattttgaacctagtttacttcactgtaatcaagcatccccatc |
34600359 |
T |
|
| Q |
317 |
ttcattctaagcttctgaaatgcctcaagcttcaaagctttagtcatcaagtctgcaacctgctcctgagttacacaatgtactaattcaatttctccat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34600358 |
ttcattctaagcttctgaaatgcctcaagcttcaaagctttagtcatcaagtctgcaacctgctcctgagttacacaatgcactaattcaatttctccat |
34600259 |
T |
|
| Q |
417 |
ccttcacaagatctcttaaaaaatgaaaacgaactttgatatgtttg |
463 |
Q |
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| T |
34600258 |
ccttcacaagatctcttaaaaaatgaaaacgaactttgatatgtttg |
34600212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 34596380 - 34596147
Alignment:
| Q |
17 |
tgtagagatatggaatatgaaactcaaaactgcaactttattgattaaacatagactattaaatagtcaaaacaattggaaactgaaaagctataaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
34596380 |
tgtagagatatggaatatgaaactcaaaactgctgctttattgataaaatatagactattaaatagtcaaaacaactagaaactgaaaagctataaaatg |
34596281 |
T |
|
| Q |
117 |
gcccactaaaacaatactcacacgactgaatgaaatgtgaaactgcttcctaaagactaggacaaataaagacagcaatagcataattcctaacatatag |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
34596280 |
gcccactaaaacaatactcaaacgactgaatgaaatgtgaaactacttcctaaagactaggacaaataaagacaacaataacataattcctaacatatag |
34596181 |
T |
|
| Q |
217 |
caacagactaaacagcagtaacaaatatcttttca |
251 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |
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| T |
34596180 |
aaacagact-aacggcagtaacaaatatcttttca |
34596147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 36479563 - 36479741
Alignment:
| Q |
43 |
aaactgcaactttattgattaaacatagactattaaatagtcaaaacaattggaaact-gaaaagctataaaatagcccactaaaacaatactcacacga |
141 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
36479563 |
aaactgctcctttattcatagaacttagactattaaatagtcaaaacaactagaaacaagaaaagctataaaatagcccactaaagaaataccggcacga |
36479662 |
T |
|
| Q |
142 |
ctgaatgaaatgtgaaactgcttcctaaagactaggacaaataaagacagcaatagcataattcctaacatatagcaac |
220 |
Q |
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| | | || | ||||| |||||||||||||||||||||| || ||| ||||| ||||||||||||| |||||||| |
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| T |
36479663 |
ttaattaaattaaaaaactacttcctaaagactaggacaaatgaaaacaacaatattataattcctaacaaatagcaac |
36479741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 1185157 - 1185032
Alignment:
| Q |
68 |
tagactattaaatagtcaaaacaattggaaactgaaaagctataaaatagcccactaaaacaatactcacacgactgaatgaaatgtgaaactgc-ttcc |
166 |
Q |
| |
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||||||||||| |||||||||||| | || |||||||||||||||||||||||||| ||||| |||||| | ||| |||||||||||| | |||| |
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| T |
1185157 |
tagactattaagtagtcaaaacaactacaacaagaaaagctataaaatagcccactaaaggtatactgacacga-ttaattaaatgtgaaactactttcc |
1185059 |
T |
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| Q |
167 |
taaagactaggacaaataaagacagca |
193 |
Q |
| |
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||||||||| ||||||| |||| |||| |
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|
| T |
1185058 |
taaagactatgacaaatgaagatagca |
1185032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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