View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20470_low_6 (Length: 474)
Name: NF20470_low_6
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20470_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 31443672 - 31443218
Alignment:
| Q |
17 |
cactatcatcttcaacctcaaactcgcaaaccaaaacgaagacaaaggtgtatactacgacgccattcgtcttacattcgctctcttcctcgacgtcaac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31443672 |
cactatcatcttcaacctcaaactcgcaaaccaaaacgaagacaaaggtgtatactacgacgccatttgtcttacattcgctctcttcctcgacgtcaac |
31443573 |
T |
|
| Q |
117 |
accacgcgtccactagccaactccactctcgacggtttctaccaaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31443572 |
accacgcgtccactagccaactccactctcgacggtttctaccaaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtg |
31443473 |
T |
|
| Q |
217 |
gtggagtgaaccgtacagtgcaaggaagtgttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgacaccg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31443472 |
gtggagtgaaccgtacagtgcaaggaagtgttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgacaccg |
31443373 |
T |
|
| Q |
317 |
tttgtctggaggggcaaatgtggaagttaatgttagttcagggcagaaggtgaatcctaaagggatcaggcttggtaatgatccagtacgggtcgggtct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31443372 |
tttgtctggaggggcaaatgtggaagttaatgttagttcagggcagaaggtgaatcctaaagggatcaggcttggtaatgatccagttcgggtcgggtct |
31443273 |
T |
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| Q |
417 |
gaagctgcaccagtttgtggattatgggttgctctttctggaacctttgcttctc |
471 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
31443272 |
gaagctgcaccggttcgtggattatgggttgctctttctggaacttttgtttctc |
31443218 |
T |
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