View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20470_low_9 (Length: 404)

Name: NF20470_low_9
Description: NF20470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20470_low_9
NF20470_low_9
[»] chr4 (38 HSPs)
chr4 (17-385)||(48898857-48899225)
chr4 (27-214)||(45365806-45365993)
chr4 (27-148)||(45371660-45371781)
chr4 (63-201)||(7790381-7790519)
chr4 (28-200)||(48156016-48156188)
chr4 (111-344)||(7773495-7773722)
chr4 (24-147)||(48870915-48871038)
chr4 (24-147)||(48876219-48876342)
chr4 (59-151)||(49043786-49043878)
chr4 (24-147)||(48886601-48886724)
chr4 (111-288)||(7765853-7766033)
chr4 (111-201)||(7771696-7771786)
chr4 (111-157)||(7878728-7878774)
chr4 (113-198)||(7237415-7237500)
chr4 (17-142)||(48864395-48864520)
chr4 (239-344)||(48852851-48852950)
chr4 (246-356)||(49043994-49044095)
chr4 (62-142)||(49038499-49038579)
chr4 (114-153)||(7786813-7786852)
chr4 (69-144)||(45384520-45384595)
chr4 (111-150)||(48853033-48853072)
chr4 (227-288)||(7786675-7786736)
chr4 (111-148)||(7908656-7908693)
chr4 (96-141)||(47208238-47208283)
chr4 (62-143)||(48147334-48147415)
chr4 (246-287)||(50669297-50669338)
chr4 (243-283)||(37826798-37826838)
chr4 (306-370)||(48705238-48705302)
chr4 (306-354)||(48903115-48903163)
chr4 (227-339)||(49048361-49048464)
chr4 (319-349)||(48870713-48870743)
chr4 (319-349)||(48886399-48886429)
chr4 (111-141)||(48903316-48903346)
chr4 (315-356)||(48147578-48147619)
chr4 (316-349)||(50250637-50250670)
chr4 (255-287)||(7908549-7908581)
chr4 (239-279)||(45371866-45371906)
chr4 (111-151)||(50666666-50666706)
[»] chr8 (7 HSPs)
chr8 (24-358)||(15349030-15349361)
chr8 (72-283)||(12195543-12195754)
chr8 (72-283)||(12439971-12440182)
chr8 (24-92)||(4030371-4030439)
chr8 (113-143)||(4962191-4962221)
chr8 (225-283)||(12200561-12200619)
chr8 (225-283)||(12444989-12445047)
[»] chr5 (6 HSPs)
chr5 (58-207)||(9120058-9120207)
chr5 (111-196)||(179364-179449)
chr5 (61-152)||(29688479-29688570)
chr5 (74-142)||(42561966-42562034)
chr5 (61-152)||(29712061-29712152)
chr5 (243-288)||(42562129-42562174)
[»] chr3 (3 HSPs)
chr3 (24-152)||(47451483-47451611)
chr3 (111-145)||(11015161-11015195)
chr3 (164-288)||(11024220-11024344)
[»] chr6 (2 HSPs)
chr6 (59-149)||(21016174-21016264)
chr6 (306-344)||(21015994-21016032)
[»] chr7 (2 HSPs)
chr7 (111-150)||(48884176-48884215)
chr7 (243-283)||(48884049-48884089)
[»] chr1 (2 HSPs)
chr1 (111-148)||(24310570-24310607)
chr1 (112-148)||(24416132-24416168)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 48899225 - 48898857
Alignment:
Q  17 aatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  48899225 aatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttacttta 48899126  T
Q  117 tattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899125 tattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaa 48899026  T
Q  217 tatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899025 tatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatg 48898926  T
Q  317 aaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtacttgt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898925 aaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaaggtacttgt 48898857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 45365806 - 45365993
Alignment:
Q  27 ctttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttca 126  Q
    ||||||||| |||| || ||| |||||||   |||||||||||||||||||||||||||  |||||   |||||||| ||    ||||| ||||||||||    
T  45365806 ctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttca 45365905  T
Q  127 tcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgagg 214  Q
    |||||||||||||||||||||||||| ||||||    |||||| | ||||||||| |||||||| ||||||||||||||||| |||||    
T  45365906 tcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtgagg 45365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 45371660 - 45371781
Alignment:
Q  27 ctttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttca 126  Q
    ||||||||||| ||||||||| ||||||||  ||| |||| |||||| ||||||||||||| ||||   |||||||| || |  ||||||||||||||||    
T  45371660 ctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttca 45371759  T
Q  127 tcacccatatttcaactgtatc 148  Q
    | ||||||||||||||||||||    
T  45371760 taacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 7790519 - 7790381
Alignment:
Q  63 ggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcattagcataatttg 162  Q
    |||||| ||||||||| ||||||||||||    |||||||| || |  ||||||||||||||||||||||||||||||| |||||||||| ||||||       
T  7790519 ggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatcct 7790420  T
Q  163 cagcccatatactgaaaaaatctccaaagacccacaaac 201  Q
     ||| |||| ||||| ||| |||||||| ||||||||||    
T  7790419 tagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 48156016 - 48156188
Alignment:
Q  28 tttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcat 127  Q
    |||||||| |||| | |||||||||| | | |||   |||||||||||||||||| ||||||||    |||||||| || |  ||||||||||| |||||    
T  48156016 tttttgtagagcatattgggtaaaaggaaagagtataaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcat 48156115  T
Q  128 cacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaa 200  Q
    |||||||||||||||| | ||||||||  |||   ||||||||| ||||| ||| |||||||| |||||||||    
T  48156116 cacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 344
Target Start/End: Original strand, 7773495 - 7773722
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat--- 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||| ||| | | | |||||||| |||||||||||| |||       
T  7773495 actttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacccacaaaccagaatgta 7773594  T
Q  208 cctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaa 307  Q
    ||   | | |||| |  | || || |||| ||| |||||| |||| |||||||||| |||||||||||| |||||| |||||      |||   | | ||    
T  7773595 ccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacatt------cca---acgtaa 7773685  T
Q  308 atcacgatgaaaagccaaccaatgaatagccccatta 344  Q
    ||||||| | |||||||||||||||||||||||||||    
T  7773686 atcacgacgcaaagccaaccaatgaatagccccatta 7773722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 48871038 - 48870915
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctt 123  Q
    |||||||||||||||||||||||| ||||| ||  |  || |||| |||||| || |||||||||||||   |||||||| || || ||||||||||| |    
T  48871038 ccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcat 48870939  T
Q  124 tcatcacccatatttcaactgtat 147  Q
    |||||||||| ||||||| |||||    
T  48870938 tcatcacccacatttcaattgtat 48870915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 48876342 - 48876219
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctt 123  Q
    |||||||||||||||||||||||| ||||| ||  |  || |||| |||||| || |||||||||||||   |||||||| || || ||||||||||| |    
T  48876342 ccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcat 48876243  T
Q  124 tcatcacccatatttcaactgtat 147  Q
    |||||||||| ||||||| |||||    
T  48876242 tcatcacccacatttcaattgtat 48876219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 49043786 - 49043878
Alignment:
Q  59 agtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcatt 151  Q
    |||||||||| ||||||||| || ||||||||||   ||||| || || |  ||||||||||||||||||||||||||||||||| |||||||    
T  49043786 agtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 48886724 - 48886601
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctt 123  Q
    |||||||||||||||||||||||| ||||| ||  |   | |||| |||||| || |||||||||||||   |||||||| || || ||||||||||| |    
T  48886724 ccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcat 48886625  T
Q  124 tcatcacccatatttcaactgtat 147  Q
    |||||||||| ||||||| |||||    
T  48886624 tcatcacccacatttcaattgtat 48886601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 288
Target Start/End: Complemental strand, 7766033 - 7765853
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat--- 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |  ||    | |||||||||||| ||| |||||| | |||||||||||| |||       
T  7766033 actttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccagatacccacaaaccagaatgta 7765934  T
Q  208 cctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 288  Q
    ||   |   | || || | ||||| |||| ||| |||||| |||| | |||||||||||||||||||| ||||||||||||    
T  7765933 ccaatgctgtgtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacat 7765853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 7771786 - 7771696
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaac 201  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||    ||| |||| ||||| ||| |||||||| ||||||||||    
T  7771786 actttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 7878774 - 7878728
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcattagcata 157  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  7878774 actttgtattctttcatcacccatatttcaactgtatcattatcata 7878728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 7237415 - 7237500
Alignment:
Q  113 tttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccaca 198  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||||    |||||||| ||||| ||| |||||||| |||||||    
T  7237415 tttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 48864520 - 48864395
Alignment:
Q  17 aatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttg 116  Q
    ||||| ||||||||||||| |||| || ||   |||||||  ||||| |||   ||||||||||||||||||| ||   |||||||| || |  ||||||    
T  48864520 aatatcgccactttttgtagagcataaaggaagaaagtaccgagtggaaataaaatcaataggaagaacaagaatcttagtccaagacgaatgcactttg 48864421  T
Q  117 tattctttcatcacccatatttcaac 142  Q
    ||||||||||||||||||||||||||    
T  48864420 tattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 48852950 - 48852851
Alignment:
Q  239 agacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagcc 338  Q
    ||||| |||||| |||||||||||| ||||||||||||| ||||| |||||||     ||| |  | |||||| || |||||||||||||||||||||||    
T  48852950 agacaactctaaaagtttcctttccattaaatcaaaggccacaataacattat----tcattg--gtaaatcatgacgaaaagccaaccaatgaatagcc 48852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 49043994 - 49044095
Alignment:
Q  246 tctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccccattat 345  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||       ||| |||  |||||| |||||||||||||||| |||||||||||||||     
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacatt-------cattgat--aaatcaagatgaaaagccaaccagtgaatagccccattaa 49044084  T
Q  346 agagtgaccct 356  Q
    |||| ||||||    
T  49044085 agagcgaccct 49044095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 49038499 - 49038579
Alignment:
Q  62 gggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaac 142  Q
    ||||||||||  |||||  ||||||||||||   |||||||| || |  ||||||||||||||||||||||||||||||||    
T  49038499 gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 7786852 - 7786813
Alignment:
Q  114 ttgtattctttcatcacccatatttcaactgtatcattag 153  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  7786852 ttgtattctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 45384520 - 45384595
Alignment:
Q  69 ccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactg 144  Q
    ||||||| |||||||||| |||||   |||||||| || |  ||||| ||||||||||||||||||||||||||||    
T  45384520 ccatcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 48853072 - 48853033
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcat 150  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  48853072 actttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 7786736 - 7786675
Alignment:
Q  227 atcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 288  Q
    ||||| |||| ||| |||||| |||| | |||||||||||||||||||| ||||||||||||    
T  7786736 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacat 7786675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 7908693 - 7908656
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatc 148  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7908693 actttgtattctttcatcacccatatttcaagtgtatc 7908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 47208283 - 47208238
Alignment:
Q  96 gtccaagaggattttactttgtattctttcatcacccatatttcaa 141  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  47208283 gtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 48147334 - 48147415
Alignment:
Q  62 gggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaact 143  Q
    |||||||||||||||||  | |  |||||||   |||||||| || |  |||||||||||||||||||||||||||||||||    
T  48147334 gggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 50669338 - 50669297
Alignment:
Q  246 tctaacagtttcctttccgttaaatcaaaggcaacaatgaca 287  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  50669338 tctaacagtttcctttccatcaaatcaaaggcaacaatgaca 50669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 37826798 - 37826838
Alignment:
Q  243 atctctaacagtttcctttccgttaaatcaaaggcaacaat 283  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  37826798 atctctaacagtttcctttccattaaattaaaggcaacaat 37826838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 48705238 - 48705302
Alignment:
Q  306 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatc 370  Q
    |||||| || || |||||||||||||||||||||||||||||||   |||||||| ||| |||||    
T  48705238 aaatcatgacgataagccaaccaatgaatagccccattatagagcacccctgcattgggcttatc 48705302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 48903163 - 48903115
Alignment:
Q  306 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgacc 354  Q
    |||||| |||||||||||||| ||||||||||||||||| |||| ||||    
T  48903163 aaatcatgatgaaaagccaactaatgaatagccccattaaagagcgacc 48903115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 49048361 - 49048464
Alignment:
Q  227 atcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaac 326  Q
    |||||||||  ||||||| ||||  || || |||||||||||||||||||||||||| |||||       ||| |||  |||||| ||||||||||||||    
T  49048361 atcatctggcagagacatatctacaaggtttctttccgttaaatcaaaggcaacaataacatt-------catcgat--aaatcaagatgaaaagccaac 49048451  T
Q  327 caatgaatagccc 339  Q
    || ||||||||||    
T  49048452 cagtgaatagccc 49048464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 48870743 - 48870713
Alignment:
Q  319 aagccaaccaatgaatagccccattatagag 349  Q
    |||||||||||||||||||||||||||||||    
T  48870743 aagccaaccaatgaatagccccattatagag 48870713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 48886429 - 48886399
Alignment:
Q  319 aagccaaccaatgaatagccccattatagag 349  Q
    |||||||||||||||||||||||||||||||    
T  48886429 aagccaaccaatgaatagccccattatagag 48886399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 48903346 - 48903316
Alignment:
Q  111 actttgtattctttcatcacccatatttcaa 141  Q
    |||||||||||||||||||||||||||||||    
T  48903346 actttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 48147578 - 48147619
Alignment:
Q  315 tgaaaagccaaccaatgaatagccccattatagagtgaccct 356  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  48147578 tgaaaagccaaccaatgaatagccccactaaaaagtgaccct 48147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 50250637 - 50250670
Alignment:
Q  316 gaaaagccaaccaatgaatagccccattatagag 349  Q
    ||||||||||||||||||||||||||||| ||||    
T  50250637 gaaaagccaaccaatgaatagccccattaaagag 50250670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 7908581 - 7908549
Alignment:
Q  255 ttcctttccgttaaatcaaaggcaacaatgaca 287  Q
    ||||||||| |||||||||||||||||||||||    
T  7908581 ttcctttccattaaatcaaaggcaacaatgaca 7908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 45371866 - 45371906
Alignment:
Q  239 agacatctctaacagtttcctttccgttaaatcaaaggcaa 279  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  45371866 agacatctctaaaagtttccgttccattaaatcaaaggcaa 45371906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 50666706 - 50666666
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcatt 151  Q
    ||||||||||||| ||||||||||| ||||| |||||||||    
T  50666706 actttgtattcttacatcacccataattcaattgtatcatt 50666666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 358
Target Start/End: Complemental strand, 15349361 - 15349030
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctt 123  Q
    ||||| ||||||| |||||| ||||||||||||| ||| |||    ||||||||  |||||||||| ||   |||||||| || || |||||||||||||    
T  15349361 ccactctttgtacggcacaaagggtaaaagtacagagttggatcatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctt 15349262  T
Q  124 tcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttc 223  Q
    ||||||||||||||||||   ||||||||| |||||  | || ||| | ||| ||||| || |||||||||||||||||||||||   || |  ||||||    
T  15349261 tcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttc 15349162  T
Q  224 caaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagcc 323  Q
     |||||||||||||||| |||||| ||||||||||||||  |||||||||| |||||||| |  ||||||  ||| |||   ||||||||||||||||||    
T  15349161 aaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaagga---aaatcacgatgaaaagcc 15349065  T
Q  324 aaccaatgaatagccccattatagagtgaccctgc 358  Q
    ||||||||||||||||||||||||||  |||||||    
T  15349064 aaccaatgaatagccccattatagagacaccctgc 15349030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 283
Target Start/End: Complemental strand, 12195754 - 12195543
Alignment:
Q  72 tcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccata 171  Q
    ||||||||||  |||||||||   |||||||| |||| |  |||||||||||||||| ||||||||||||||||   |||| || ||||   |  |||||    
T  12195754 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccata 12195655  T
Q  172 tactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatc 271  Q
     ||||| ||| | |||||| |||||||||||| ||| ||  |||  ||| ||  ||||||||||| |||  |||||||||| |||||||||| |||||||    
T  12195654 gactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatc 12195555  T
Q  272 aaaggcaacaat 283  Q
    |||| |||||||    
T  12195554 aaagacaacaat 12195543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 283
Target Start/End: Complemental strand, 12440182 - 12439971
Alignment:
Q  72 tcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccata 171  Q
    ||||||||||  |||||||||   |||||||| |||| |  |||||||||||||||| ||||||||||||||||   |||| || ||||   |  |||||    
T  12440182 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccata 12440083  T
Q  172 tactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatc 271  Q
     ||||| ||| | |||||| |||||||||||| ||| ||  |||  ||| ||  ||||||||||| |||  |||||||||| |||||||||| |||||||    
T  12440082 gactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatc 12439983  T
Q  272 aaaggcaacaat 283  Q
    |||| |||||||    
T  12439982 aaagacaacaat 12439971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 4030371 - 4030439
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtc 92  Q
    |||||| ||||| |||||| |||| |||||||| || ||| ||||||||||||||  ||||||||||||    
T  4030371 ccacttattgtagagcacattggggaaaagtacttaatggaaatgccatcaatagacagaacaagagtc 4030439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 4962191 - 4962221
Alignment:
Q  113 tttgtattctttcatcacccatatttcaact 143  Q
    |||||||||||||||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaact 4962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 12200619 - 12200561
Alignment:
Q  225 aaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 283  Q
    |||||||||||| ||   ||||||| || |||||||||| |||||||||||||||||||    
T  12200619 aaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 12445047 - 12444989
Alignment:
Q  225 aaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 283  Q
    |||||||||||| ||   ||||||| || |||||||||| |||||||||||||||||||    
T  12445047 aaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12444989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 9120207 - 9120058
Alignment:
Q  58 tagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcattagcata 157  Q
    |||||| |||||| |||||||  | |||||||||   | |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  9120207 tagtggaaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaa 9120108  T
Q  158 atttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 207  Q
    ||    |||||||||||||| ||| |||||||| ||||||| | ||||||    
T  9120107 atccatagcccatatactgagaaattctccaaatacccacacatcacaat 9120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 179449 - 179364
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagaccca 196  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||| ||| | |||||| |||||    
T  179449 actttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 29688570 - 29688479
Alignment:
Q  61 tgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcatta 152  Q
    |||||||| || ||| || |||||| ||||||   |||||||| ||||  || ||||||| ||||||||||||||||||||||||| |||||    
T  29688570 tgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtaccatta 29688479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 42561966 - 42562034
Alignment:
Q  74 aataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaac 142  Q
    |||||||||||||||| ||   |||||||| || |  |||||||||||||||||||||||||| |||||    
T  42561966 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 29712061 - 29712152
Alignment:
Q  61 tgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatcatta 152  Q
    ||||||| ||||||| ||  | ||||||||||   |||||||| ||| | || ||||||| || |||||||||||||||||||||| |||||    
T  29712061 tgggaattccatcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccatta 29712152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 42562129 - 42562174
Alignment:
Q  243 atctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 288  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||    
T  42562129 atctctagaagtttcctttccgttaaatgaaaggcaacaataacat 42562174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 47451483 - 47451611
Alignment:
Q  24 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctt 123  Q
    |||||||||||| ||   || ||||||||||||  || |||||||||||||||||||||||||||||||     |||||| || || |||||||||||||    
T  47451483 ccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctt 47451582  T
Q  124 tcatcacccatatttcaactgtatcatta 152  Q
    |||||||||||||||||||| ||||||||    
T  47451583 tcatcacccatatttcaactatatcatta 47451611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 11015161 - 11015195
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgt 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  11015161 actttgtattctttcataacccatatttcaactgt 11015195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 11024220 - 11024344
Alignment:
Q  164 agcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttcc 263  Q
    |||||||| ||||| ||| |||||||| | ||||||| ||||||||  |||   ||| || ||| ||||||||  || |||||| || |||| |||||||    
T  11024220 agcccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttcc 11024319  T
Q  264 gttaaatcaaaggcaacaatgacat 288  Q
      |||||||||||||| ||| ||||    
T  11024320 actaaatcaaaggcaataataacat 11024344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 21016264 - 21016174
Alignment:
Q  59 agtgggaatgccatcaataggaagaacaagagtcaccgtccaagaggattttactttgtattctttcatcacccatatttcaactgtatca 149  Q
    |||||||||| |||||||||  | |  |||||||   |||||||| || | |||||||||||||||||| ||||||||||||||| |||||    
T  21016264 agtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatca 21016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 21016032 - 21015994
Alignment:
Q  306 aaatcacgatgaaaagccaaccaatgaatagccccatta 344  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21016032 aaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 48884215 - 48884176
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatcat 150  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  48884215 actttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 48884089 - 48884049
Alignment:
Q  243 atctctaacagtttcctttccgttaaatcaaaggcaacaat 283  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  48884089 atctctaacagtttcttttccattaaatcaaaggcagcaat 48884049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 24310607 - 24310570
Alignment:
Q  111 actttgtattctttcatcacccatatttcaactgtatc 148  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24310607 actttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 24416168 - 24416132
Alignment:
Q  112 ctttgtattctttcatcacccatatttcaactgtatc 148  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  24416168 ctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University