View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20471_low_1 (Length: 241)

Name: NF20471_low_1
Description: NF20471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20471_low_1
NF20471_low_1
[»] chr8 (3 HSPs)
chr8 (86-241)||(556683-556838)
chr8 (1-89)||(556540-556628)
chr8 (124-241)||(22573077-22573194)
[»] chr1 (8 HSPs)
chr1 (127-241)||(26793702-26793816)
chr1 (124-241)||(19806812-19806931)
chr1 (127-241)||(4076402-4076516)
chr1 (141-241)||(50004952-50005052)
chr1 (127-229)||(4950136-4950238)
chr1 (201-239)||(6768281-6768319)
chr1 (124-161)||(12855371-12855408)
chr1 (171-240)||(28883936-28884005)
[»] chr4 (4 HSPs)
chr4 (161-241)||(44125983-44126063)
chr4 (125-241)||(19181469-19181585)
chr4 (125-241)||(45413826-45413942)
chr4 (189-241)||(2183302-2183354)
[»] chr2 (3 HSPs)
chr2 (133-241)||(40626420-40626528)
chr2 (127-222)||(6457543-6457638)
chr2 (189-241)||(40054519-40054571)
[»] chr3 (1 HSPs)
chr3 (134-241)||(40416900-40417007)
[»] chr5 (2 HSPs)
chr5 (126-240)||(32529433-32529549)
chr5 (128-241)||(34731215-34731328)
[»] chr6 (1 HSPs)
chr6 (133-240)||(8573845-8573952)
[»] chr7 (4 HSPs)
chr7 (125-241)||(2334042-2334161)
chr7 (126-240)||(5784255-5784369)
chr7 (189-235)||(41147920-41147966)
chr7 (124-241)||(41482476-41482593)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 556683 - 556838
Alignment:
Q  86 tagaaataaaacaatgagcaatcagtcataacattggtcccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatc 185  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  556683 tagaaataaaacaatgagaaatcagtcataacattgggcccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaac 556782  T
Q  186 cgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  556783 cgctgtttcgtgcaacaatagaaaatgataaattaaacctatttctaatcatatcc 556838  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 556540 - 556628
Alignment:
Q  1 aagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556540 aagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 556628  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 22573077 - 22573194
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||| ||| ||||||||||||| | |||||||| |    ||| ||||||||  ||||||| ||||| ||||| ||| || ||||||||| || |||    
T  22573077 cccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 22573176  T
Q  224 ttatttctaatcctatcc 241  Q
     | |||||||||||||||    
T  22573177 ctgtttctaatcctatcc 22573194  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 26793702 - 26793816
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||| ||| | ||||||||| | | ||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  227 tttctaatcctatcc 241  Q
    |||||||||||||||    
T  26793802 tttctaatcctatcc 26793816  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 19806931 - 19806812
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcg--tgcaacaatagaaaatgataaattaa 221  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||||| | ||||| |  |||| |||||| ||| ||||||||||    
T  19806931 cccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaa 19806832  T
Q  222 acttatttctaatcctatcc 241  Q
    || |||||||||||||||||    
T  19806831 acctatttctaatcctatcc 19806812  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 4076516 - 4076402
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||||||||||||||||||||  | ||| || ||| ||  |||| | ||||| ||||| |||||| ||| |||||||||||| ||    
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  227 tttctaatcctatcc 241  Q
    || ||||||||||||    
T  4076416 ttactaatcctatcc 4076402  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 50005052 - 50004952
Alignment:
Q  141 ataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 240  Q
    ||||| ||||||||||||||||| | ||| |||| | ||| |||  | ||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||    
T  50005052 ataagaagataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatc 50004953  T
Q  241 c 241  Q
    |    
T  50004952 c 50004952  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 4950136 - 4950238
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||| | ||| ||||||||||||  ||| |||| || | ||||  | ||||| ||||| |||||||||||||||| ||||||| |    
T  4950136 gtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactca 4950235  T
Q  227 ttt 229  Q
    |||    
T  4950236 ttt 4950238  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 6768281 - 6768319
Alignment:
Q  201 caatagaaaatgataaattaaacttatttctaatcctat 239  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  6768281 caatagaaaatgataaattaaacttatttcctatcctat 6768319  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 12855408 - 12855371
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgata 161  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12855408 cccgtttggtgcacatgataaggagacaggatatgata 12855371  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 28884005 - 28883936
Alignment:
Q  171 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 240  Q
    |||| |||| |||||| |||||| ||||| |||||| | | |||||||||||||| || |||||||||||    
T  28884005 tatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatc 28883936  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 44125983 - 44126063
Alignment:
Q  161 aaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcc 241  Q
    ||||||||| ||||||||||||||  ||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  44125983 aaaccaatcatatcctgatccaatatgctatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcc 44126063  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 19181585 - 19181469
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 224  Q
    ||||||| |||||||||||  |||| | |||||||||||   ||| |||||||||||||||   ||||| ||||| ||| |  | ||||||||||||||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  225 tatttctaatcctatcc 241  Q
    |||||||||||||||||    
T  19181485 tatttctaatcctatcc 19181469  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 45413942 - 45413826
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 224  Q
    ||||||| ||||| ||||| ||||| |||||| |||| | | ||| |||| |||| ||||| | ||||| ||||| |||||| ||| ||||||||||||     
T  45413942 ccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacc 45413843  T
Q  225 tatttctaatcctatcc 241  Q
    ||||||  |||||||||    
T  45413842 tatttcctatcctatcc 45413826  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 2183302 - 2183354
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcc 241  Q
    ||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcc 2183354  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 40626420 - 40626528
Alignment:
Q  133 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 232  Q
    ||||||||||| | ||| ||||||||||||| | ||| |||| |||| ||||| ||||||| ||||| |||||| ||| ||||| |||||  ||||||||    
T  40626420 tgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttcta 40626519  T
Q  233 atcctatcc 241  Q
    |||||||||    
T  40626520 atcctatcc 40626528  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 6457543 - 6457638
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaa 222  Q
    ||||| |||||||||||  |||| ||||||||||| | | ||| |||| |||| ||||| | ||||| ||||| ||||||||||||||||||||||    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaa 6457638  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 40054571 - 40054519
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcc 241  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||  |||||||||||    
T  40054571 tgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcc 40054519  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 40416900 - 40417007
Alignment:
Q  134 gcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaa 233  Q
    |||||||||| | ||| ||||||||| ||| | ||| ||||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||  ||||| |||    
T  40416900 gcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaa 40416999  T
Q  234 tcctatcc 241  Q
    ||||||||    
T  40417000 tcctatcc 40417007  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 32529549 - 32529433
Alignment:
Q  126 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtat--cctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||||||||||||||| ||| | ||||||||||| | ||| |||  | |  | ||||||||||||| ||||| ||||| ||||  |||||||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  224 ttatttctaatcctatc 240  Q
    |||||||||||| ||||    
T  32529449 ttatttctaatcatatc 32529433  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 34731215 - 34731328
Alignment:
Q  128 tttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttat 227  Q
    |||| ||| |||||||| |||||||||||||||||  | ||| ||||||  |  |||||  ||||| ||||| |||||| ||| |||||| ||||| |||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  228 ttctaatcctatcc 241  Q
    |  |||||||||||    
T  34731315 tgttaatcctatcc 34731328  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 8573952 - 8573845
Alignment:
Q  133 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 232  Q
    ||||||||||||| | | || |||||||||| ||||  ||||||| | |||||| | |||| | ||| |||||| ||||||||| |||||| ||||||||    
T  8573952 tgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttcta 8573853  T
Q  233 atcctatc 240  Q
    ||| ||||    
T  8573852 atcttatc 8573845  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 2334161 - 2334042
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctg---atccaatccgctgtttcgtgcaacaatagaaaatgataaattaa 221  Q
    ||||||||||| ||||||||||||| | ||||||||||  | ||| |||||||   || ||||||| ||||| ||||| |||||| |   ||||| ||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  222 acttatttctaatcctatcc 241  Q
    || ||||| |||||||||||    
T  2334061 acctatttttaatcctatcc 2334042  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 5784255 - 5784369
Alignment:
Q  126 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactt 225  Q
    |||||| | |||||||||| ||||||| ||||||| ||   ||  |||| |||||||||| |   ||| ||||| ||||| |||| ||||| ||||||||    
T  5784255 cgtttggtacacatgataaagagatagcatatgatgaaattattatatcttgatccaatcagtaatttggtgcatcaataaaaaaggataagttaaactt 5784354  T
Q  226 atttctaatcctatc 240  Q
    |||||||||| ||||    
T  5784355 atttctaatcgtatc 5784369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 41147966 - 41147920
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatc 235  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  41147966 tgtttggtgcatcaatagaaaaggataaattaaacttatttataatc 41147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 41482593 - 41482476
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||| ||||||||||| | ||| | |||| |||||| | ||| | |||||||  ||| |||||||| ||||| ||| || ||| ||||| ||||||    
T  41482593 cccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaac 41482494  T
Q  224 ttatttctaatcctatcc 241  Q
     ||||| ||||| |||||    
T  41482493 ctatttttaatcatatcc 41482476  T

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