View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20472_high_2 (Length: 376)
Name: NF20472_high_2
Description: NF20472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20472_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 10877357 - 10877720
Alignment:
| Q |
1 |
taagttaaaagacttacatcaaatatcaaccgttaattttaataaatcttacggttcaaattgtatagacaaaagaaactgataaaacacattacagctg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10877357 |
taagttaaaagacttacatcaaatctcaaccgttaattttaataaatcttacggttcaaattgtatagacaaaagaaactgataaaacacattacagctg |
10877456 |
T |
|
| Q |
101 |
atcacaaatctccttcgaaaatttcttgtatcaatgaaaagccttgcaacctcggataaataactggaatcactgattacctaataatctaaagcattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10877457 |
atcacaaatctccttcgaaaatttcttgtatcaatgaaaagccttgcaacctcggataaataactggaatcactgattacctaataatctaaagcattga |
10877556 |
T |
|
| Q |
201 |
taatcaagcaaacatcaattatagattctacaccaccaatttgtactatgagatttaagccaacagccctttaagtgattgctatgtgacaaccctaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
10877557 |
taatcaagcaaacatcaattatagattctacaccaccaatttgtactatgagatttaagccaacagccctttaagtcattgttatgtgacaaccctaaaa |
10877656 |
T |
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| Q |
301 |
gaattgagatacccaggtgcttgtacaaggttcttgggtatgccaaaatcataattcattccta |
364 |
Q |
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| T |
10877657 |
gaattgagatatccaggtgcttgtacaaggttcttgggtatgccaaaatcataattcattccta |
10877720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13950208 - 13949996
Alignment:
| Q |
1 |
taagttaaaagacttacatcaaatatcaaccgttaattttaataaatcttacggttcaaattgtatagacaaaagaaactgataaaacacattacagctg |
100 |
Q |
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| T |
13950208 |
taagtcaaaagacttataccaaatctcaaccgttaattttaattgatcgcacc-ttcaaattatatcaacaaaagaaactaataaaacacgttgcagttg |
13950110 |
T |
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| Q |
101 |
atcacaaatctccttcgaaaatttcttgtatcaatgaaaagccttgcaacctcggataaataactggaatcactgattacctaataatctaaagcattga |
200 |
Q |
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| T |
13950109 |
atccgagatcccgttcgaaaatttcttgtatcaacgaaaagccttacaatctc------ataactggaaccactaattgcctgataatataaaacatcga |
13950016 |
T |
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| Q |
201 |
taatcaagcaaacatcaatt |
220 |
Q |
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||||||||||||| |||||| |
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| T |
13950015 |
taatcaagcaaacctcaatt |
13949996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1159096 - 1159304
Alignment:
| Q |
1 |
taagttaaaagacttacatcaaatatcaaccgttaattttaataaatcttacggttcaaattgtatagacaaaagaaactgataaaacacattacagctg |
100 |
Q |
| |
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||||| |||||||||||| ||||| |||||||||||||||||| ||||||| |||| ||||| |||||||||| |||||| || |||| ||||||||||| |
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| T |
1159096 |
taagtcaaaagacttacaccaaatctcaaccgttaattttaatgaatcttagggttgaaattatatagacaaaggaaactaattaaacgcattacagctg |
1159195 |
T |
|
| Q |
101 |
atcacaaatctccttcgaaaatttcttgtatc-------aatgaaaagccttgcaacctcggataaataactggaatcactgattacctaataatctaaa |
193 |
Q |
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||| || ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| || ||||| |||| ||||||||||| |||||| |
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| T |
1159196 |
atcccagatctccttcgaaaatttcttgcatcagtgaaaagtgaaaagccttgcaacctccgataaacaa-tggaaccactaattacctaatagtctaaa |
1159294 |
T |
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| Q |
194 |
gcattgataa |
203 |
Q |
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|||| ||||| |
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| T |
1159295 |
gcatcgataa |
1159304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 1159307 - 1159380
Alignment:
| Q |
283 |
tatgtgacaaccctaaaagaattgagatacccaggtgcttgtacaaggttcttgggtatgccaaaatcataatt |
356 |
Q |
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| T |
1159307 |
tatgggacaaccctaaaagaattgagatatctaggtgcctgtacaagtttcttgggtatgccaaaatcataatt |
1159380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 19548694 - 19548598
Alignment:
| Q |
260 |
ccaacagccctttaagtgattgctatgtgacaaccctaaaagaattgagatacccaggtgcttgtacaaggttcttgggtatgccaaaatcataatt |
356 |
Q |
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|||||| |||||||||| |||| || ||| || | |||||||||| ||| | ||||||||||||||||| ||||| | ||| |||||||||||||| |
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| T |
19548694 |
ccaacacccctttaagtcattgttaggtggcagctctaaaagaatctagaaatccaggtgcttgtacaagtttctttgctattccaaaatcataatt |
19548598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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