View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20472_high_3 (Length: 357)
Name: NF20472_high_3
Description: NF20472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20472_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 1868232 - 1868434
Alignment:
| Q |
110 |
tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaagga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1868232 |
tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaagga |
1868331 |
T |
|
| Q |
210 |
tttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaa |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1868332 |
cttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaa |
1868431 |
T |
|
| Q |
310 |
taa |
312 |
Q |
| |
|
||| |
|
|
| T |
1868432 |
taa |
1868434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 112 - 312
Target Start/End: Original strand, 1842625 - 1842825
Alignment:
| Q |
112 |
ctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1842625 |
ctaaaatattcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatt |
1842724 |
T |
|
| Q |
212 |
tctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaata |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
1842725 |
tctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaata |
1842824 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
|
| |
|
|
| T |
1842825 |
a |
1842825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 1856695 - 1856839
Alignment:
| Q |
168 |
ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc |
267 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||| |||||| || |||||||| ||||||||||||||||||||||| |||| |||||| | ||||| |
|
|
| T |
1856695 |
ttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagcc |
1856794 |
T |
|
| Q |
268 |
aaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
312 |
Q |
| |
|
|||| | |||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
1856795 |
aaattgaacaattcattaatgaggtggatgttgtctctcaaataa |
1856839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 312
Target Start/End: Complemental strand, 1816364 - 1816205
Alignment:
| Q |
153 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
252 |
Q |
| |
|
|||||||| |||| |||||||| || | ||| ||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
1816364 |
aactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaa |
1816265 |
T |
|
| Q |
253 |
taatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
312 |
Q |
| |
|
|||||| ||||||||| | |||||||| || ||||| | |||| |||||||||||| |
|
|
| T |
1816264 |
caatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataa |
1816205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1842538 - 1842580
Alignment:
| Q |
1 |
aaatgaaagagaaattctttgagcagaatggtggtttgatttt |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1842538 |
aaatgaaagagaaattctttgagcagaatggtggtctgatttt |
1842580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 9156283 - 9156118
Alignment:
| Q |
147 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
246 |
Q |
| |
|
|||||||||| || || || ||||||||||||| ||| ||||||||||| |||||||||||| || || || || | ||| |||||| | ||||| | |
|
|
| T |
9156283 |
accaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaat |
9156184 |
T |
|
| Q |
247 |
caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
312 |
Q |
| |
|
|||||||||||||| || |||||| | || || || |||||||||||||| || || ||||||| |
|
|
| T |
9156183 |
caaaaataatagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataa |
9156118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 9219104 - 9218939
Alignment:
| Q |
147 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
246 |
Q |
| |
|
|||||||||| ||||| | |||||||| || | ||| ||||||||||| |||||||||||| || | ||||| | |||||| ||| ||||||||| |
|
|
| T |
9219104 |
accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagt |
9219005 |
T |
|
| Q |
247 |
caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
312 |
Q |
| |
|
| ||||||||||| || || ||| | |||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
9219004 |
ccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataa |
9218939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1868123 - 1868165
Alignment:
| Q |
1 |
aaatgaaagagaaattctttgagcagaatggtggtttgatttt |
43 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1868123 |
aaatgaaagagaaattcttcgaacagaatggtggtttgatttt |
1868165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 9118278 - 9118422
Alignment:
| Q |
168 |
ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc |
267 |
Q |
| |
|
||||||||||| | ||| ||||| ||||| ||||||||||| || || ||||| ||||| || ||| |||||||||| | ||||||||| || | |
|
|
| T |
9118278 |
ttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatc |
9118377 |
T |
|
| Q |
268 |
aaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
312 |
Q |
| |
|
||||| | |||||||| |||||||||||| |||| || ||||||| |
|
|
| T |
9118378 |
aaatcgagcaattcattaatgaggtagttattctgtcccaaataa |
9118422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 37567622 - 37567761
Alignment:
| Q |
153 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
252 |
Q |
| |
|
|||||||| ||||| |||| ||| || | ||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| || |||| |
|
|
| T |
37567622 |
aactttgatgagaacttaaccataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaa |
37567721 |
T |
|
| Q |
253 |
taatagatagaagccaaatcaatcaattcatcaatgaggt |
292 |
Q |
| |
|
||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
37567722 |
caatagatgaaagccaaaatgaacaattcattaatgaggt |
37567761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University