View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20472_low_1 (Length: 364)
Name: NF20472_low_1
Description: NF20472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20472_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 15473717 - 15473380
Alignment:
| Q |
19 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttgtgaaggaggtagctctgataaga |
118 |
Q |
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| T |
15473717 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttgtgaaggaggtagctctgataaga |
15473618 |
T |
|
| Q |
119 |
atattaaccagtttgtggattatttgacaaacacaaatatgaagggaaatgatttgagtagttattagagtagtcattttcatccatgaattatagtgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15473617 |
atattaaccagtttgtggattatttgacaaacacaaatatgaagggaaatgatttgagtagttattagagtagtcattttcatccatgaattatagtgaa |
15473518 |
T |
|
| Q |
219 |
tttggttatgtaattgtatgatctatttgtccctttgaatcttgttagacatggtagaattcttcaataacatttgtagcgaaattgaaatttaccaacc |
318 |
Q |
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| T |
15473517 |
tttggttatgtaattgtatgatctatttgtccctttgaatcttgttagacatggtagaattcttcaataacatttgtagcgaaattgaaatttaccaacc |
15473418 |
T |
|
| Q |
319 |
acataaaatgttagaatttggataccatttgaccctatg |
357 |
Q |
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| T |
15473417 |
a-ataaaatgttagaatttggataccatttgaccctatg |
15473380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 15465574 - 15465214
Alignment:
| Q |
19 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttgtgaaggaggtagctctgataaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| | |
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| T |
15465574 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttctgaacgaggtagctctaataaaa |
15465475 |
T |
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| Q |
119 |
atattaaccagtttgtggattatttgacaaacacaaatatgaagggaaatgatttgagtagttattagagtagtcattttcatccatgaattatagtgaa |
218 |
Q |
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| T |
15465474 |
atattgacgagtttgtggatcatttgatgaacacaaataaaaaaggaaatgatttgagtggttactagagtggtcattttcttccatgaataatagtgaa |
15465375 |
T |
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| Q |
219 |
tttgg--------------------ttatgtaattgtatgat-ctatttgtccctttgaatcttgttagacatggtagaattcttcaataacatttgtag |
297 |
Q |
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||||| |||||| ||||||||| ||||||| |||||||||| | |||||||||||| ||||||||||||| |||||||| |
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| T |
15465374 |
tttggttagattgaattataaagatttatgtggttgtatgatgttatttgttcctttgaatcatcttagacatggtaaaattcttcaataatatttgtag |
15465275 |
T |
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| Q |
298 |
cgaaattgaaat------ttaccaaccacataaaatgttagaatttggataccatttgacc |
352 |
Q |
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| T |
15465274 |
cgaaactgaaatgtgacattgccaaccacataaaatgttagaatttggaaaccatttgacc |
15465214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 15460373 - 15460169
Alignment:
| Q |
19 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttgtgaaggaggtagctctgataaga |
118 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||||||| || ||| | | |||||| |
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| T |
15460373 |
gtgatggaaggtgaaagaagtgaagtgattagaaggaattctagtgaatgaaagaagttggttagggatgttgtttgtgaaacagatagtttttataaga |
15460274 |
T |
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| Q |
119 |
atattaaccagtttgtggattatttgacaaacacaaatatgaagggaaatgatttgagtagttattagagtagtca-ttttcatccatgaattatagtga |
217 |
Q |
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||||| || ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| |||||| |||| |||| |||||||||| ||||||| |
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| T |
15460273 |
atattgacgagtttgtggatcatttgatgaacacaaataagaagggaaatgatttgagtggttactagagtggtcattttttatccatgaataatagtga |
15460174 |
T |
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| Q |
218 |
atttg |
222 |
Q |
| |
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||||| |
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| T |
15460173 |
atttg |
15460169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 15463808 - 15463440
Alignment:
| Q |
19 |
gtgatggaaagtgaaagaagtgaagtgattagaaggaatgctagtgaat---ggaagaagttggctagggatgctgtttgtgaaggaggtagctctgata |
115 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
15463808 |
gtgatggaaggtgaaagaagtgaagtgattagaaggaatactagtgaatattgaaagaagttggctagggatgttgtttctgaaggaggtagttctgata |
15463709 |
T |
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| Q |
116 |
agaatattaaccagtttgtggattatttgacaaacacaaatatgaagggaaatgatttgagtagttattagagtagtcattttcatccatgaattatagt |
215 |
Q |
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|||||||| || || |||||||| |||||| ||| | |||| |||||||||||| ||||| |||| |||||| || |||||||||||||||| ||||| |
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| T |
15463708 |
agaatattgacgagattgtggatcatttgatgaaccctaataagaagggaaatgaaatgagtggttactagagtggtaattttcatccatgaataatagt |
15463609 |
T |
|
| Q |
216 |
gaatttgg--------------------ttatgtaattgtatgatcta--tttgtccctttgaatcttgttagacatggtagaattcttcaataacattt |
293 |
Q |
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|||||| | |||||| |||||||||| || ||| | |||||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
15463608 |
gaattttgttagattgaattatgaagatttatgtgattgtatgatgtaatttttttcctttgaatcatgttagacatggtaaaattcttcaataatattt |
15463509 |
T |
|
| Q |
294 |
gtagcgaaattga-----aatttaccaaccacataaaatgttagaatttggataccatttgaccctatg |
357 |
Q |
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|||| |||| ||| | || |||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
15463508 |
gtagtgaaactgaatgtgacattgccaaccacataaaatgttagaatttggaaaccatgtgaccttatg |
15463440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 352
Target Start/End: Complemental strand, 15427372 - 15427102
Alignment:
| Q |
109 |
tctgataagaatattaaccagtttgtggattatttgacaaacacaaatatgaa-gggaaatgatttgagtagttattagagtagtcattttcatccatga |
207 |
Q |
| |
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||||||||||||||| || ||||||||||| |||||| |||||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
15427372 |
tctgataagaatattcacgagtttgtggatcatttgatgaacacaaataagaaagggaaatgatttgaggggtt-ttagagtggtcattttcatccatga |
15427274 |
T |
|
| Q |
208 |
attatagtgaatttgg--------------------ttatgtaattgtatgat-ctatttgtccctttgaatcttgttagacatggtagaattcttcaat |
286 |
Q |
| |
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|| ||||| ||||||| |||||||||| | |||| |||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
15427273 |
ataatagtaaatttggttagattgaattatgaagatttatgtaattttttgatgttatttgtcccttcgaatcttgttagacatggtagaattgttcaat |
15427174 |
T |
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| Q |
287 |
aacatttgtagcgaaattgaaat------ttaccaaccacataaaatgttagaatttggataccatttgacc |
352 |
Q |
| |
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|| |||||||||||||||||||| || ||||| |||||| |||| ||||||||| ||||||||||| |
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| T |
15427173 |
aatatttgtagcgaaattgaaatgagacattgccaactccataaattgtttgaatttggaaaccatttgacc |
15427102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 15460722 - 15460635
Alignment:
| Q |
36 |
aagtgaagtgattagaaggaatgctagtgaatggaagaagttggctagggatgctgtttgtgaaggaggtagctctgataagaatatt |
123 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||| | ||||||||||||| |
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| T |
15460722 |
aagtgaagtgataagaaataatgctagtgaatggaagaagttggctagggatgttgtttctgaaagaggtagttttgataagaatatt |
15460635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 15460120 - 15460023
Alignment:
| Q |
258 |
tcttgttagacatggtagaattcttcaataacatttgtagcgaaattgaaatttaccaaccacataaaatgttagaatttggataccatttgaccctatg |
357 |
Q |
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||||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||| ||| |||| |||||||||||| ||||||||||| |||| |
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| T |
15460120 |
tcttgttagacatggtagaatacttcaatatcttttgtagcaaaattgaaatttgccaac--cattaaatattagaatttggaaaccatttgaccttatg |
15460023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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