View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20472_low_4 (Length: 205)
Name: NF20472_low_4
Description: NF20472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20472_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 5181576 - 5181476
Alignment:
| Q |
76 |
aaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
175 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5181576 |
aaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattgaagtcggcaacctatcgcgtcaaagaggaaatg |
5181477 |
T |
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| Q |
176 |
g |
176 |
Q |
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| T |
5181476 |
g |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 5159355 - 5159249
Alignment:
| Q |
69 |
aagtctaaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaaga |
168 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
5159355 |
aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaaga |
5159256 |
T |
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| Q |
169 |
ggaaatg |
175 |
Q |
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| T |
5159255 |
gaaaatg |
5159249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
125 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
114 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
175 |
Q |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 5172373 - 5172339
Alignment:
| Q |
76 |
aaattcttggagaatcctagatgacaaattggtat |
110 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
5172373 |
aaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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