View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_10 (Length: 469)
Name: NF20473_high_10
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 29621116 - 29621560
Alignment:
| Q |
1 |
ggagaagtttcaaactttaggggtagacttggtgaaaaaactttataggtagaaacatagcaatcataagagtgttggatttgagaacttacaaagccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29621116 |
ggagaagtttcaaactttaggggtagacttggtgaaaaaactttataggtagaaacatagcaatcataagagtgttggatttgagaacttacaaagccaa |
29621215 |
T |
|
| Q |
101 |
gaccaagaagatagttaaagttgtgtatttcaacaaggctgaaggaggaactgatgtaccattgtatgaataaaatagcgatatcaaacccatgcaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29621216 |
gaccaagaagatagttaaagttgtgtatttcaacaaggctgaaggaggaactgatgtaccattgtatgaataaaatagcgatatcaaacccatgcaagat |
29621315 |
T |
|
| Q |
201 |
gatgccactagaaaccctaaagaagagtatccaaatgccaccgttggatcacttggataattgcacatcatagcatctttttcttgtacaatgactccca |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29621316 |
gatgccacgagaaaccctaaagaagagtatccaaatgccaccgttggatcacttggataattgcacatcatagcatctttttcttttacaatgactccca |
29621415 |
T |
|
| Q |
301 |
ttggaggctnnnnnnnnnnnnnncccaaaatgtgttaccaaaatcatattccacagaaatttgaaggtaaaacctttctctaaacattataaaatagtac |
400 |
Q |
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| T |
29621416 |
ttggaggct----aaaaaaaaaacccaaaatgtgttaccaaaatcatattccacagaaatttgaaggtaaaacctttctctaaacattataaaatagtac |
29621511 |
T |
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| Q |
401 |
ctttttattttcaccaacatgcaatgcctagaataaaagaaattactccaaac |
453 |
Q |
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| T |
29621512 |
ctttttattttcaccaa----caatgcctagaataaaagaaattactccaaac |
29621560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 277
Target Start/End: Complemental strand, 1792300 - 1792063
Alignment:
| Q |
41 |
ctttataggtagaaacatagcaatcataagagtgttggatttgagaa-cttacaaagccaagaccaagaagatagttaaagttgtgtatttcaacaaggc |
139 |
Q |
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|||||||| |||| ||| | |||| |||||||| ||||||||||||| |||||||||| | || ||||||| || ||||||||||||||| |||||||| |
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| T |
1792300 |
ctttatagatagatacaaaacaatgataagagtcttggatttgagaaacttacaaagctatgatgaagaagacagataaagttgtgtatttgaacaaggc |
1792201 |
T |
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| Q |
140 |
tgaaggaggaactgatgtaccattgtatgaataaaatagcgatatcaaacccatgcaagatgatgccactagaaaccctaaagaagagtatccaaatgcc |
239 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||| |||| |||||| ||||||||| || |
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| T |
1792200 |
tgaaggaggaaccgatgtaccattgtatgagtaaaatatagatatcaaacccattaaagatgatgccactaaaaatcctatagaagaatatccaaatacc |
1792101 |
T |
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| Q |
240 |
accgttggatcacttggataattgcacatcatagcatc |
277 |
Q |
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|| |||||||||||||| |||||||| ||||||||||| |
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| T |
1792100 |
actgttggatcacttgggtaattgcatatcatagcatc |
1792063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 1791515 - 1791454
Alignment:
| Q |
388 |
tataaaatagtacctttttattttcaccaacatgcaatgcctagaataaaagaaattactccaaac |
453 |
Q |
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|||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
1791515 |
tatacaatagtacctttttattttcaccaa----caatgcgaagaataaaagaaattagtccaaac |
1791454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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