View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_18 (Length: 400)
Name: NF20473_high_18
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 38939411 - 38939796
Alignment:
| Q |
1 |
ttcctaacatgacccataattgaatagaaccgagattcacgaactata--gaggaatccactaaggaagagaataacggaattgccttggcattgggttt |
98 |
Q |
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| T |
38939411 |
ttcctaacataacccataattgaatagaaccgagattcaggaactatacagaggaatccactaaggaagagaataatggaattgccttggcattgggttt |
38939510 |
T |
|
| Q |
99 |
tggcaaacaatttcagcgcaaaatgttgaaatttacttatgctttgctgactgtaatcatgagagctttctctttcaattaaatattgtttgtttgcaaa |
198 |
Q |
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| T |
38939511 |
tggcaaacaatttcagcgcaaaatgttgaaatttacttatgctttgctgactgtaatcatgagagctttctctttcaattaaatattgtttgtttgcaaa |
38939610 |
T |
|
| Q |
199 |
gaaaagaatgaaaaggatgggaatcccactgaaaaaggaaattggttaaaaagagtggaggaagatacattataggtttgaccatgtcatacatgaactt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38939611 |
gaaaagaatgaaaaggatgggaatcccactgaaaaaggaaattggttaaaaagagtggaggaagatacattataggtttgaccatgtcatacatgaactt |
38939710 |
T |
|
| Q |
299 |
gaaaaacttttaagggcccttaaacaatgctaaccctcaatcataaaataaattgatccgatttgttaattaaatccatttagtta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38939711 |
gaaaaacttttaagggcccttaaacaatgctaaccctcaatcataaaataaattgatccgatttgttaattaaatccatttagtta |
38939796 |
T |
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