View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_19 (Length: 396)
Name: NF20473_high_19
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 10648147 - 10648515
Alignment:
| Q |
20 |
ggattctctgacccaacattatggaataagaaattatgcaaagctccgaagcttgcacgaggacagagagctttgggctccagtttactccaaggacaca |
119 |
Q |
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| T |
10648147 |
ggattctctgacccaacattatggaataagaaatcatgcaaagctccgaagcttgcacgaggacagagagctttgggctccagtttactccaaggacaca |
10648246 |
T |
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| Q |
120 |
ttttttgctggaatttctaattacgaaaagggtgagtctacgattcccttttttaagggtcatgtgcatcaacaaacttctttgaaagannnnnnngaga |
219 |
Q |
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| T |
10648247 |
ttttttgctggaatttctaattacgaaaagggtgagtctacgattcccttttttaagggtcatgtgcatcaacaaacttctttgaaagatttttttgaga |
10648346 |
T |
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| Q |
220 |
tttatgaattagttcaacnnnnnnnnnnnnnnnctgaagctcttgatgatttggagtcacaaaattcaagtccacaactgaaaacaagatgccactatga |
319 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
10648347 |
tttatgaattagttcaacaaaaaaagcaaaaaactgaagctcttgatgatttggagtcacaaaattcaagcccgcaactgaaatcaagatgccactatga |
10648446 |
T |
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| Q |
320 |
gttgcaactctctaaattgtacacaaatgcaatattcagtaagttccaagatgaggtggtgatgatgtc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10648447 |
gttgcaactctctaaattgtacacaaatgcaatattcagtaagttccaagatgaggtggtgatgatgtc |
10648515 |
T |
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