View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_27 (Length: 321)
Name: NF20473_high_27
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 18644819 - 18644516
Alignment:
| Q |
1 |
tttgtcgggtggtcatctgggacaagaaagcttggtatgaagtactgttctaacaggccttgtgcattgtatgcggttagagcaccgcatcacgagtcac |
100 |
Q |
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| T |
18644819 |
tttgtcgggtggtcatctgggacaagaaagcttggtatgaagtactgttctaacaggccttgtgcattgtatgcggttagagcaccgcatcacgagtcac |
18644720 |
T |
|
| Q |
101 |
aatctgaggaaccagaacatcagtgagtcactttagtaagaaattcttaactcccaattttttcatatcttttagaaagaacaaacttgttgctaagttt |
200 |
Q |
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| T |
18644719 |
aatctgaggaaccagaacatcagtgagtcactttagtaagaaattcttaactcccaattttttcatatcttttagaaagaacaaacttgttgctaagttt |
18644620 |
T |
|
| Q |
201 |
ggttaattctgaaaagaatgatgaaactaatattttacatatagctcatcaactgaagaattgcatgcactgaacctaactccaacaataagcagtgctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18644619 |
ggttaattctgaaaagaatgatgaaactaatattttacatatagctcatcaactgaagaattgcatgcactgaacctaactccaacaataagcagtgctc |
18644520 |
T |
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| Q |
301 |
tttt |
304 |
Q |
| |
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|||| |
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| T |
18644519 |
tttt |
18644516 |
T |
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