View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20473_high_32 (Length: 262)
Name: NF20473_high_32
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 44550036 - 44549802
Alignment:
| Q |
9 |
agcagagaggacactgaatgcaggcgcaacaagctcagcagatgacacaacaacaactattggctgcgttcctccgttttgtatgctcaacatttccaac |
108 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44550036 |
agcagggaggacactgcatgcaggcgcaacaagctcagcagatgacacaacaacaactattggcttcgttcctccgttttgtatgctcaacatttccaac |
44549937 |
T |
|
| Q |
109 |
agcggcaagccttgcagaaccaacttggtatgtattcaagaggaagtcaaggccttcacatgttgcatagttactggaggttttcctgatttcagcagct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44549936 |
agcggcaagccttgcagaaccaacttggtatgtattcaagaggaagtcaaggccttcacatgttacatagttactggaggctttcctgatttcagcagct |
44549837 |
T |
|
| Q |
209 |
cgacaggcgatggtttgcatggtactagtttaagc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44549836 |
cgacaggcgatggtttgcatggtactagtttaagc |
44549802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 35836677 - 35836505
Alignment:
| Q |
9 |
agcagagaggacactgaatgcaggcgcaacaagctcagcagatgacacaacaacaactattggctgc--gttcctccgttttgtatgctcaacatttcca |
106 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||| || ||||||||||||| | || |
|
|
| T |
35836677 |
agcagggaggacactacatgcaggctcaacaagctcagcagatgacacaacaacaattaatggctgcacgttcctctcttatgtatgctcaacagcttca |
35836578 |
T |
|
| Q |
107 |
acagcggcaagccttgcagaaccaacttggtatgtattcaagaggaagtcaaggccttcacatgttgcatagt |
179 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
35836577 |
acagcagcaagccttgcaaagccaacttggtatgaattccagtggaagtcaaggccttcacatgttgcatagt |
35836505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University