View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20473_high_33 (Length: 258)
Name: NF20473_high_33
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47988288 - 47988530
Alignment:
| Q |
1 |
ctttggtttcaagtttcaaccatatatagaagacaatttgaacgttgtcaatattttttaactcattaatatctcaccaaacttccatgcactaattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988288 |
ctttggtttcaagtttcaaccatatatagaagacaatttgaacgttgtcaatattttttaactcattaatatctcaccaaacttccatgcactaattttt |
47988387 |
T |
|
| Q |
101 |
cattcttttgttctgtcatatatgtctgtaacgtcagttgaaagataaacttgggtaacgtacacatgcctctgattgatctttgtggcactcacttgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988388 |
cattcttttgttctgtcatatatgtctgtaacgtcagttgaaagataaacttgggtaacgtacacatgcctctgattgatctttgtggcactcacttgtc |
47988487 |
T |
|
| Q |
201 |
aattaaggatcatggagtgtccttgaaattccattttgttgat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988488 |
aattaaggatcatggagtgtccttgaaattccattttgttgat |
47988530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 47978260 - 47978308
Alignment:
| Q |
56 |
ttttaactcattaatatctcaccaaacttccatgcactaatttttcatt |
104 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
47978260 |
ttttaagtcatgaatatttcaccaaacttccgtgcaataatttttcatt |
47978308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 38356101 - 38356151
Alignment:
| Q |
71 |
atctcaccaaacttccatgcactaatttttcattcttttgttctgtcatat |
121 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| | |||||||| |
|
|
| T |
38356101 |
atctcaccaaacttccatgcaataatttttcatttttttgctttgtcatat |
38356151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University