View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_41 (Length: 215)
Name: NF20473_high_41
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 31053407 - 31053605
Alignment:
| Q |
1 |
ttaataagagtgaagaataaaaataatnnnnnnnnncattaaccatgatcaagggcttgatgtgttctgcagtgagatccattgagcagtaaggatcatt |
100 |
Q |
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| T |
31053407 |
ttaataagagtgaagaataaaaataattaaaaaaaacattaaccatgatcaagggcttgatgtgttctgcagtgagatccattgagcagtaaggatcatt |
31053506 |
T |
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| Q |
101 |
cttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgttcatcaacaatactttgataaagttc |
199 |
Q |
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| T |
31053507 |
cttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgttcatcaacaatactttgataaagttc |
31053605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 31039917 - 31040116
Alignment:
| Q |
1 |
ttaataagagtgaagaataaaaataatnnnnnnnnn-cattaaccatgatcaagggcttgatgtgttctgcagtgagatccattgagcagtaaggatcat |
99 |
Q |
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| T |
31039917 |
ttaataagagtgaagaataaaaataattaaaaaaaaacattaaccatgatcaagggcttgatgtgttctgcagtgagatccattgagcagtaaggatcat |
31040016 |
T |
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| Q |
100 |
tcttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgttcatcaacaatactttgataaagttc |
199 |
Q |
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| T |
31040017 |
tcttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgttcatcaacaatactttgataaagttc |
31040116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 31073030 - 31073173
Alignment:
| Q |
37 |
cattaaccatgatcaagggcttgatgtgttctgcagtgagatccattgagcagtaaggatcattcttcagttcaatcaaggcatcaataacatcatcctc |
136 |
Q |
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||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || || |
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| T |
31073030 |
cattaaccatgatcaagggtttgatgtgttcagcactgagatccattgagcagtaaggatcattcttcaattcaatcaaggcatcaattacatcctcttc |
31073129 |
T |
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| Q |
137 |
atgtggaggcaacttcttcctttctggatcaagatgttcatcaa |
180 |
Q |
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||||||||||||||||| || | |||||||| ||||||||||| |
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| T |
31073130 |
gtgtggaggcaacttctttctatttggatcaatatgttcatcaa |
31073173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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