View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_high_43 (Length: 206)
Name: NF20473_high_43
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 8593235 - 8593069
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8593235 |
atatctgatctagtagttgtaagatacattaagcagccaattaaactttggtatagtgtttcatccacttgttcttc---aacatccttgcatagcctct |
8593139 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
8593138 |
cctttggacacataggagtgctcatgcttttacggttctccatattgaatttctttaacatctcgtttgc |
8593069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 29871089 - 29870920
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
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||||||| ||||||||||||||||| |||||||||| | ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
29871089 |
atatctggtcttgtagttgtaagatacattaagcagtcaattaaacttcggtagagtgtttcatccacttgttcttcttgaacatccttgcatagcttct |
29870990 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
29870989 |
cctttggacacataggagtgttcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
29870920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 21024401 - 21024570
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21024401 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttct |
21024500 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
21024501 |
cctttggacacataggagtgctcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
21024570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 19968408 - 19968239
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
19968408 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttcggtagagtgtttcatccatttgttcttcttcaacatccttgcatagcttct |
19968309 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |
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|
| T |
19968308 |
cctttggacacataggagtgctcatgcttttacaataatccatattgaatttctttaacatctcttttgc |
19968239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 6367709 - 6367787
Alignment:
| Q |
29 |
tcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatcc |
107 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||| ||| |||||||||||||| |||||||||||||||||| |
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|
| T |
6367709 |
tcttgtagttgtaagatacattaagcatccaattaaacttcggttgagtgtttcatccacgtgttcttcttcaacatcc |
6367787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 20783220 - 20783389
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
20783220 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttct |
20783319 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
20783320 |
cctttggacacataggagtgctcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
20783389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 29472652 - 29472483
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29472652 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttct |
29472553 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
29472552 |
cctttggacacataggagtgctcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
29472483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 26054268 - 26054099
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
26054268 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttcagtaaagtgtttcaaccacttgttcttcttcaacatccttgcatagcttct |
26054169 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
26054168 |
cctttggacacataggagtgctcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
26054099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 26074321 - 26074152
Alignment:
| Q |
21 |
atatctgatcttgtagttgtaagatgcattaagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctct |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
26074321 |
atatctggtcttgtagttgtaagatacattaagcagccaattaaacttccgtaaagtgtttcacccacttgttcttcttcaacatccttgcatagcttct |
26074222 |
T |
|
| Q |
121 |
cctttggacacataggagtgctcatgcttttacagttctccatattgaatttctttaacatctcctttgc |
190 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
26074221 |
cctttggacacgtaggagtgctcatgcttttacagtaatccatattgaatttctttaacatctcttttgc |
26074152 |
T |
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