View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20473_high_7 (Length: 533)

Name: NF20473_high_7
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20473_high_7
NF20473_high_7
[»] chr3 (70 HSPs)
chr3 (14-520)||(2658991-2659497)
chr3 (14-483)||(2644201-2644673)
chr3 (163-483)||(2501894-2502211)
chr3 (141-483)||(2491819-2492167)
chr3 (96-363)||(7334160-7334427)
chr3 (96-483)||(7324352-7324739)
chr3 (95-280)||(9565749-9565934)
chr3 (102-483)||(9561912-9562287)
chr3 (101-350)||(2635594-2635846)
chr3 (96-483)||(2476374-2476764)
chr3 (150-363)||(2631220-2631433)
chr3 (107-214)||(746315-746422)
chr3 (151-280)||(9594600-9594729)
chr3 (172-227)||(754606-754661)
chr3 (164-226)||(4142123-4142185)
chr3 (170-227)||(2442038-2442095)
chr3 (172-281)||(7430533-7430642)
chr3 (151-281)||(7942430-7942560)
chr3 (174-270)||(7442976-7443072)
chr3 (172-227)||(13498223-13498278)
chr3 (164-230)||(2456245-2456311)
chr3 (164-226)||(3754600-3754662)
chr3 (168-226)||(4157937-4157995)
chr3 (175-280)||(768329-768434)
chr3 (170-226)||(2696727-2696783)
chr3 (371-479)||(9594841-9594949)
chr3 (151-226)||(989396-989471)
chr3 (164-223)||(9587174-9587233)
chr3 (164-222)||(3746012-3746070)
chr3 (173-230)||(771497-771554)
chr3 (175-224)||(2459277-2459326)
chr3 (174-227)||(43991959-43992012)
chr3 (174-226)||(1891063-1891115)
chr3 (435-483)||(9566098-9566146)
chr3 (175-227)||(37753345-37753397)
chr3 (151-226)||(956381-956456)
chr3 (167-226)||(1940571-1940630)
chr3 (320-362)||(763706-763748)
chr3 (320-362)||(9585280-9585322)
chr3 (166-216)||(44001605-44001655)
chr3 (376-477)||(747354-747455)
chr3 (320-357)||(1437868-1437905)
chr3 (164-217)||(2686301-2686354)
chr3 (175-224)||(7398179-7398228)
chr3 (442-479)||(7443271-7443308)
chr3 (170-226)||(803213-803269)
chr3 (175-227)||(12133096-12133148)
chr3 (428-479)||(768615-768666)
chr3 (164-227)||(783788-783851)
chr3 (167-226)||(968671-968730)
chr3 (167-226)||(1007461-1007520)
chr3 (167-226)||(1022489-1022548)
chr3 (151-226)||(1931130-1931205)
chr3 (175-226)||(7432054-7432105)
chr3 (324-366)||(783948-783990)
chr3 (164-226)||(792893-792955)
chr3 (96-130)||(2502280-2502314)
chr3 (164-226)||(2678388-2678450)
chr3 (303-357)||(7443117-7443171)
chr3 (172-226)||(9608341-9608395)
chr3 (326-363)||(754760-754797)
chr3 (179-224)||(997578-997623)
chr3 (179-224)||(1013968-1014013)
chr3 (161-214)||(13479590-13479643)
chr3 (175-224)||(23197014-23197063)
chr3 (428-483)||(2474842-2474898)
chr3 (447-483)||(9608643-9608679)
chr3 (320-360)||(13526471-13526511)
chr3 (167-223)||(14888604-14888660)
chr3 (172-220)||(37757733-37757781)
[»] chr5 (14 HSPs)
chr5 (164-226)||(11081813-11081875)
chr5 (167-226)||(23766854-23766913)
chr5 (167-226)||(23816702-23816761)
chr5 (172-270)||(20292951-20293049)
chr5 (172-270)||(20301399-20301497)
chr5 (172-270)||(20305812-20305910)
chr5 (172-270)||(20310216-20310314)
chr5 (168-226)||(23769639-23769697)
chr5 (168-226)||(23819487-23819545)
chr5 (171-227)||(2067048-2067104)
chr5 (176-226)||(3181717-3181767)
chr5 (164-226)||(23732167-23732229)
chr5 (164-226)||(23861015-23861077)
chr5 (443-484)||(20292716-20292757)
[»] chr4 (3 HSPs)
chr4 (150-222)||(20016160-20016232)
chr4 (151-226)||(20019748-20019823)
chr4 (167-223)||(22672119-22672175)
[»] scaffold0044 (1 HSPs)
scaffold0044 (151-266)||(89103-89218)
[»] chr2 (11 HSPs)
chr2 (173-364)||(33038016-33038213)
chr2 (175-226)||(36577366-36577417)
chr2 (175-226)||(7156192-7156243)
chr2 (175-226)||(7160754-7160805)
chr2 (173-365)||(33020177-33020366)
chr2 (175-216)||(6538844-6538885)
chr2 (173-270)||(33026613-33026710)
chr2 (175-226)||(7174373-7174424)
chr2 (320-365)||(33026518-33026563)
chr2 (376-481)||(33037881-33037986)
chr2 (175-223)||(7168690-7168738)
[»] chr6 (5 HSPs)
chr6 (166-225)||(24417477-24417536)
chr6 (175-224)||(19119065-19119114)
chr6 (175-224)||(19126359-19126408)
chr6 (175-226)||(17368366-17368417)
chr6 (175-223)||(370785-370833)
[»] chr1 (7 HSPs)
chr1 (164-222)||(51381444-51381502)
chr1 (175-226)||(51858606-51858657)
chr1 (185-226)||(23896147-23896188)
chr1 (177-226)||(24629213-24629262)
chr1 (175-220)||(51407559-51407604)
chr1 (177-226)||(51782799-51782848)
chr1 (320-364)||(51829632-51829676)
[»] chr7 (3 HSPs)
chr7 (175-227)||(1078160-1078212)
chr7 (176-226)||(1421170-1421220)
chr7 (148-226)||(39298977-39299055)
[»] scaffold1004 (1 HSPs)
scaffold1004 (178-266)||(2103-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (178-266)||(4598-4686)


Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 70)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 2658991 - 2659497
Alignment:
Q  14 aggaaaattcaatgtgccagctttagaatcataaacaaccaacttcatatcgtcacattcagcccaatcctgacgacattgtaccaatagttggtcatcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2658991 aggaaaattcaatgtgccagctttagaatcataaacaaccaacttcatatcgtcacattcagcccaatcctgatgacattgtaccaatagttggtcatcc 2659090  T
Q  114 tctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttca 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659091 tctgaaatatataaagctctatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttca 2659190  T
Q  214 taatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattattttcattgtcgaaatcagg 313  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2659191 taatccaaacatcccaatattcatcactacttgcaaagacacacaagcaatccctcaccacacccacgtcccacgaattattttcattgtcgaaatcagg 2659290  T
Q  314 tagccgaagcttttgatacgactccttctctaaatcaagagaaataatgacatcatatgcacaccaattaacagtgccactaacaaatagtccatgtcca 413  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2659291 tagccgaagcttttgatacgactccttctctaaatcaagagatataatgacatcatatgcaaaccaattaacagtgccactaacaaatagtccatgtcca 2659390  T
Q  414 caaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaacct 513  Q
     ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659391 gaaatggggttagaatatggaatgtcctttattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaacct 2659490  T
Q  514 tataatt 520  Q
    |||||||    
T  2659491 tataatt 2659497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 483
Target Start/End: Original strand, 2644201 - 2644673
Alignment:
Q  14 aggaaaattcaatgtgccagctttagaatcataaacaaccaacttcatatcgtcacattcagcc-caatcctgacgacattgtaccaatagttggtcatc 112  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||| |||| | ||  |||| || ||||  | || ||| |  ||||| |||||||||||    
T  2644201 aggaatattcaatgtgccagttttggaatcataaacaaccaacttgatatagccagtttcaccctcaatt-tcacaacactccaccaacagttggtcatc 2644299  T
Q  113 ctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttc 212  Q
    ||||||||||||||||||| ||  |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2644300 ctctgaaatatataaagctctactggctttcaaattctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttc 2644399  T
Q  213 ataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattattttcattgtcgaaatcag 312  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||| |||||||||| |||||||||||   |||| ||||    
T  2644400 ataatccaaacatccaaatattcatcactagttgcaaagacacacaagcaatccctcaacacaccaaagtcccacggattattttcatccccgaagtcag 2644499  T
Q  313 gtagccgaagcttttgatacgactccttctctaaatcaagagaaataatgacatcatatgcacaccaattaacagtgccactaacaaatagtccatgtcc 412  Q
    || | | ||| |||||||||||||| |||||||||| ||||||||||||||| || |||||| ||||||||| ||||||||||||||||| ||||| |||    
T  2644500 gtgggcaaagtttttgatacgactcgttctctaaatgaagagaaataatgacttcgtatgcaaaccaattaagagtgccactaacaaatactccatctcc 2644599  T
Q  413 ---acaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
       ||||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||    
T  2644600 aaaacaaatggggtcagaatatggaatgtcctgtattcttgtccaataatcagtccccaaagtattaaccctaa 2644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 163 - 483
Target Start/End: Complemental strand, 2502211 - 2501894
Alignment:
Q  163 taggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagca 262  Q
    ||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2502211 taggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcccaatattcatcactacctgcaaagacacacaagca 2502112  T
Q  263 atccctcaccacacccaagtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataatg 362  Q
    |||||| | ||||||||| | |||| |||||||||||||  | || |||||| | | ||||| |||| | ||||||||||||||||||||||||||||||    
T  2502111 atccctgagcacacccaaattccaccaattattttcattcccaaagtcaggtgggcaaagctcttgacatgactccttctctaaatcaagagaaataatg 2502012  T
Q  363 acatcatatgcacaccaattaacagtgccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcag 462  Q
    |||||  ||| |  |||||||||||||||||  |||||||  ||  | ||| |  ||| || | |||   | |||||| ||||  |||||||||||||||    
T  2502011 acatcccatgaaacccaattaacagtgccacacacaaatatccccgggccatacttggtgtaacaat---ggatgtcctctatctttctccaataatcag 2501915  T
Q  463 tccccaaagtattaacactaa 483  Q
    |||||||||||||||| ||||    
T  2501914 tccccaaagtattaaccctaa 2501894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 141 - 483
Target Start/End: Complemental strand, 2492167 - 2491819
Alignment:
Q  141 tctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattc-atca 239  Q
    |||||| || ||||||||| |||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || | ||||    
T  2492167 tctaaaccccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaa-atcctatca 2492069  T
Q  240 ctacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactcct 339  Q
     || || |||| ||||||||||||||||||| |||||  |||  | |||||| ||| ||||| || |||||||||||   ||| | |||||| |||||||    
T  2492068 atagttgcaaaaacacacaagcaatccctcagcacacttaagatcaacgaatcattctcattctcaaaatcaggtaggaaaagttgttgatatgactcct 2491969  T
Q  340 tctctaaatcaagagaaataat----ga--catcatatgcacaccaattaacagtgccactaacaaatagtccatgtccacaaatggggttagaatatgg 433  Q
    |||||||||||||||||| |||    ||  ||||| ||||  |||||||||||||||||||||| |||| ||| | |||| ||||||||| |||||||||    
T  2491968 tctctaaatcaagagaaagaatacatgaatcatcacatgctaaccaattaacagtgccactaacgaatactccgtttccataaatggggtcagaatatgg 2491869  T
Q  434 aatgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
     ||||||   |||||| |||||||||||||||||||||||| ||||||||    
T  2491868 gatgtccttgattcttgtccaataatcagtccccaaagtataaacactaa 2491819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 96 - 363
Target Start/End: Original strand, 7334160 - 7334427
Alignment:
Q  96 accaatagttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactctt 195  Q
    ||||| |||||||||||||||||||||||||||   | ||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||    
T  7334160 accaacagttggtcatcctctgaaatatataaaagagaatcggcttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctt 7334259  T
Q  196 gatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattatt 295  Q
     |||||| || |||||||| ||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||| | ||||   ||||  |  |||    
T  7334260 tatttccgtagtccttcatgatccaaacatcccaatatatatcactactggcaaagacacacaagcaatccctcaccatatccaaaatccactgaacatt 7334359  T
Q  296 ttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataatga 363  Q
    |||||| ||  ||| ||||||   ||| |  ||||| ||||| ||||||||||||||||||| |||||    
T  7334360 ttcattctcataattaggtaggaaaagttgctgatatgactctttctctaaatcaagagaaagaatga 7334427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 96 - 483
Target Start/End: Original strand, 7324352 - 7324739
Alignment:
Q  96 accaatagttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactctt 195  Q
    ||||| |||||||||||||| ||||| ||||||||    | |||||||||| |  ||||||||| |||||||| | | ||||||||||||||||||||||    
T  7324352 accaaaagttggtcatcctcagaaatgtataaagcatcgtaggcttctaaaccgcgatcttgcatgttaggaacactatacaatttagtccaagactctt 7324451  T
Q  196 gatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattatt 295  Q
     |||||| || ||||||||||||||||||||| || |   ||||| | ||||||||| ||  | ||||||||||||||||  ||||  |||  | | |||    
T  7324452 tatttccgtagtccttcataatccaaacatccaaagacatatcaccagttccaaagagaccaaggcaatccctcaccacatgcaagatccataagtcatt 7324551  T
Q  296 ttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataat----ga--catcatatgcacaccaattaacagtg 389  Q
    |||      | |||||||||||  ||| | |||||| |||||||| | ||||||||| |||| |||    ||  |||||  |||  ||||||||||||||    
T  7324552 ttc------ggaatcaggtagcaaaagatgttgatatgactccttgtttaaatcaagcgaaagaatatttgaatcatcacttgccaaccaattaacagtg 7324645  T
Q  390 ccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
    ||| | ||||||| ||| ||||||||||||  || ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  7324646 ccattgacaaatactccctgtccacaaatgttgtcagaatatgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaa 7324739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 95 - 280
Target Start/End: Original strand, 9565749 - 9565934
Alignment:
Q  95 taccaatagttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactct 194  Q
    |||||| ||||||||||| || ||||||||||||||| ||| |||||  | | |||||||||| | |||||||| | |||||||||||||||||||||||    
T  9565749 taccaacagttggtcatcgtcagaaatatataaagctttataggctttgacaccctgatcttgtatgttaggaacaatgtacaatttagtccaagactct 9565848  T
Q  195 tgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaa 280  Q
    |||| ||| ||||||||||||||||||||||||  |||   |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  9565849 tgatctccgtactccttcataatccaaacatccatatacatatcactacttgcaaagacacacaagcaacccctcaccaaacccaa 9565934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 102 - 483
Target Start/End: Original strand, 9561912 - 9562287
Alignment:
Q  102 agttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttc 201  Q
    |||||||||||||| ||| |||||||| | ||||  ||||||||| | |||||||||| |||||||| | |||| |||||||||||||||||||||||||    
T  9561912 agttggtcatcctcagaactatataaaacagtataagcttctaaaccgtgatcttgcatgttaggaacactgtataatttagtccaagactcttgatttc 9562011  T
Q  202 catactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaattattttcatt 301  Q
    ||||||| |||||||||||||||||| || |   || |||| |  | |||| ||||||||||| ||| | ||||||||||  |||| |       |||||    
T  9562012 catactcattcataatccaaacatccaaaaacaaattactagtagctaagatacacaagcaattccttagcacacccaagatccacaa------gtcatt 9562105  T
Q  302 gtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagaga---aat-aatga--catcatatgcacaccaattaacagtgccacta 395  Q
     |||  ||||||||||  || || |||||||||||||||||||| |||||||||   ||| |||||  |||||  |||  |||||||||||||||||||     
T  9562106 ctcggtatcaggtagcaaaacctgttgatacgactccttctctacatcaagagagagaataaatgaatcatcacttgccaaccaattaacagtgccactc 9562205  T
Q  396 acaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
    ||||||| ||| | |||| ||||   |||   |||||| |||||| |||||||  |||||||||||||||||||||||| ||||||||    
T  9562206 acaaatactccctctccaaaaat---gtt---atatgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaa 9562287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 101 - 350
Target Start/End: Complemental strand, 2635846 - 2635594
Alignment:
Q  101 tagttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgattt 200  Q
    ||||||||||||||| ||||||||||||||| ||| | |||||||| || ||| ||||| |||||||| | |||||||||||||||||||||||| | ||    
T  2635846 tagttggtcatcctcagaaatatataaagctttatagacttctaaaccccgatgttgcatgttaggaacactgtacaatttagtccaagactcttcactt 2635747  T
Q  201 ccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacacccaagtcccacgaa------ttat 294  Q
    ||||||||   |||||||||||||||| || |  |||||||| || |||||||||||| ||||| ||||| |||| |||||  ||||| |      | ||    
T  2635746 ccatactc---cataatccaaacatccaaaaacacatcactagttgcaaagacacacatgcaattcctcatcacatccaagatccacggaccattttcat 2635650  T
Q  295 tttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatca 350  Q
    | ||||| |||||||||||||||| ||| | | |||||||||||||||||||||||    
T  2635649 tctcattctcgaaatcaggtagccaaagttgtcgatacgactccttctctaaatca 2635594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 483
Target Start/End: Complemental strand, 2476764 - 2476374
Alignment:
Q  96 accaatagttggtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactctt 195  Q
    ||||| |||||||||||||| ||||| ||||||||  | | |||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||    
T  2476764 accaacagttggtcatcctcagaaatgtataaagcattgtaggcttctaaaccccgatcttgcatgttaggaacagtgtacaatttagtccaagactctt 2476665  T
Q  196 gatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccacaccc---aagtcccacgaatt 292  Q
     ||||||||| |  ||||||||||||||||||  | |   |||||||  | || ||| |||||||||||||||||| ||| ||   |||  ||||||||     
T  2476664 tatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagatacacaagcaatccctcactacatccaagaagatccacgaatg 2476565  T
Q  293 attttca-ttgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataa----tga--catcatatgcacaccaattaac 385  Q
    |    || ||||   |||||||||||  ||||  |||||| |||||||||| |||||||||||||| ||    |||  |||||   ||  |||||||||     
T  2476564 a----cacttgt---aatcaggtagcaaaagcagttgatatgactccttctttaaatcaagagaaagaatttttgaatcatcaagggccaaccaattaag 2476472  T
Q  386 agtgccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
    ||||||||| ||||||| |||  ||| |||||||  || ||||||||| ||||||   |||||| |||||||||||||||||||||||||||||||||    
T  2476471 agtgccactcacaaatactccccgtctacaaatgccgtaagaatatgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacactaa 2476374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 150 - 363
Target Start/End: Complemental strand, 2631433 - 2631220
Alignment:
Q  150 tgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaa 249  Q
    ||||| |||| || ||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |   ||||||| || |||    
T  2631433 tgatcgtgcatgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaacatatcactagttgcaa 2631334  T
Q  250 agacacacaagcaatccctcaccacacccaagtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatc 349  Q
    ||||||||||| |||| |||| |||||||||   ||| ||||     ||||  |||||||||||| |   ||||| |||||| ||||| || ||||||||    
T  2631333 agacacacaagtaatcactcagcacacccaatgtccaggaatatgactcatcctcgaaatcaggtgggtaaagctcttgatatgactcattttctaaatc 2631234  T
Q  350 aagagaaataatga 363  Q
    |||||||| |||||    
T  2631233 aagagaaagaatga 2631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 746315 - 746422
Alignment:
Q  107 gtcatcctctgaaatatataaagctgtatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatac 206  Q
    ||||||||| |||||||||||| || ||| ||||   ||| ||  |||||| |||||||||| | |||||||||||||||||||||||||||||||||||    
T  746315 gtcatcctcagaaatatataaatctttataggctatgaaaccccaatcttgtaggttaggaacaatgtacaatttagtccaagactcttgatttccatac 746414  T
Q  207 tccttcat 214  Q
    ||||||||    
T  746415 tccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 9594600 - 9594729
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaa 250  Q
    ||||||||| |||||||| |  | ||||||||||||||||||||| |||||| ||||  |||||||||||||||| | || |   ||||||| || ||||    
T  9594600 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 9594699  T
Q  251 gacacacaagcaatccctcaccacacccaa 280  Q
    |||||||||||||||||||| |||| ||||    
T  9594700 gacacacaagcaatccctcagcacatccaa 9594729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 754606 - 754661
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  754606 tgtacaatttagtccaagactcttgatctccatactccttcataatccaaacatcc 754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 4142123 - 4142185
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  4142123 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 2442095 - 2442038
Alignment:
Q  170 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 7430533 - 7430642
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcac 271  Q
    |||||||||||||| |||||| || ||||||||||| ||||||||||||||||||| || |  ||| || |||| ||||||  ||||||||||||  ||     
T  7430533 tgtacaatttagtctaagactttttatttccatacttcttcataatccaaacatccaaaaacccatgacaacttgcaaagatgcacaagcaatcctacaa 7430632  T
Q  272 cacacccaag 281  Q
    ||||||||||    
T  7430633 cacacccaag 7430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 7942560 - 7942430
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatc--actacttcca 248  Q
    |||||| || || ||||| | ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||  ||||  ||||| | ||    
T  7942560 gatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacat-ccaata-acatcttactacgtgca 7942463  T
Q  249 aagacacacaagcaatccctcaccacacccaag 281  Q
    |||  |||||| |||||||||||||| ||||||    
T  7942462 aaggtacacaaacaatccctcaccacccccaag 7942430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 7442976 - 7443072
Alignment:
Q  174 tacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||   || |   |||||||  | || |||||||||||||||||||||    
T  7442976 tacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaacaaatcactagcttcatagacacacaagcaatccctca 7443072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 13498278 - 13498223
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcataatccaaacatcc 13498223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 2456311 - 2456245
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaa 230  Q
    |||||||  |||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||||    
T  2456311 aggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaa 2456245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 3754662 - 3754600
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  3754662 aggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 4157937 - 4157995
Alignment:
Q  168 atagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 768329 - 768434
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcaccac 274  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||||||   || |    |||||| |  |||| ||||||||||||||||||| |||    
T  768329 acaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaacatttcactagtgtcaaatacacacaagcaatccctcaacac 768428  T
Q  275 acccaa 280  Q
    ||||||    
T  768429 acccaa 768434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 2696727 - 2696783
Alignment:
Q  170 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 479
Target Start/End: Original strand, 9594841 - 9594949
Alignment:
Q  371 tgcacaccaattaacagtgccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaa 470  Q
    |||| ||||||||||||| ||||| ||||||| |||  ||||| | ||| ||| |  || ||| |||||| |||||||| ||||||||||||||||||||    
T  9594841 tgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaa 9594940  T
Q  471 gtattaaca 479  Q
    |||| ||||    
T  9594941 gtataaaca 9594949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 989471 - 989396
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| || || ||||||| ||||||||||||||||||||| |||||| ||||| ||||| | |||||||||    
T  989471 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 989396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 9587174 - 9587233
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaac 223  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||| |||||||||||||||||    
T  9587174 aggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 3746070 - 3746012
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 222  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  3746070 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 3746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 771497 - 771554
Alignment:
Q  173 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaa 230  Q
    |||||||||||||||||| |||  ||||||||| |||||||||| |||||||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaa 771554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 2459326 - 2459277
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 43992012 - 43991959
Alignment:
Q  174 tacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    |||||||| ||||||||||||  ||||||||| |||||||||||||||||||||    
T  43992012 tacaatttggtccaagactctatatttccatattccttcataatccaaacatcc 43991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 1891063 - 1891115
Alignment:
Q  174 tacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 483
Target Start/End: Original strand, 9566098 - 9566146
Alignment:
Q  435 atgtccgctattcttctccaataatcagtccccaaagtattaacactaa 483  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  9566098 atgtcctctattcttgtccaataatcagtccccaaagtataaacactaa 9566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 37753345 - 37753397
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    |||||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatcc 37753397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 956456 - 956381
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| || || |||| || ||||||||  |||||||||||  |||||||| ||||||||||||||||||||    
T  956456 gatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 1940571 - 1940630
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| ||||||||||||| || |||||||||||||  |||||||||| |||||||||    
T  1940571 aatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatc 1940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 763706 - 763748
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaataatg 362  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  763706 aagcttttgatacgactccttctccaaatcaagagaaacaatg 763748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 9585280 - 9585322
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaataatg 362  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  9585280 aagcttttgatacgactccttctccaaatcaagagaaacaatg 9585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  166 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataa 216  Q
    |||||||||||| ||||||||||||||||| | ||||||| ||||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 477
Target Start/End: Original strand, 747354 - 747455
Alignment:
Q  376 accaattaacagtgccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtatt 475  Q
    |||||||||||||| |||| ||||||| |||   |||||| |||  || | ||| ||| ||| || |||||||| |||||||||||| ||||||||||||    
T  747354 accaattaacagtgtcactcacaaatattcccactccacatatgtcgtaataatgtgggatgccctctattcttttccaataatcagcccccaaagtatt 747453  T
Q  476 aa 477  Q
    ||    
T  747454 aa 747455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 1437905 - 1437868
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaa 357  Q
    |||||||||||||| |||||||||||||||||||||||    
T  1437905 aagcttttgatacgtctccttctctaaatcaagagaaa 1437868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 2686301 - 2686354
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataat 217  Q
    |||||||||| |||||||| ||||||||||||  |||||||| |||||||||||    
T  2686301 aggaatagtgaacaatttattccaagactctttttttccatattccttcataat 2686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 7398179 - 7398228
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    |||||||| |||||||||||| |||||||||||||||||| | |||||||    
T  7398179 acaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 7443271 - 7443308
Alignment:
Q  442 ctattcttctccaataatcagtccccaaagtattaaca 479  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7443271 ctattcttctccaataatcagtccccaaagcattaaca 7443308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 803213 - 803269
Alignment:
Q  170 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||| |||| |||||||||||||||| ||||||||| || ||||||| |||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 12133148 - 12133096
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    ||||||||||||| ||||||  ||||||||||||| |||||| ||||||||||    
T  12133148 acaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 768615 - 768666
Alignment:
Q  428 atatggaatgtccgctattcttctccaataatcagtccccaaagtattaaca 479  Q
    |||||| |||||| ||||||||||||||||||| || |||||||||| ||||    
T  768615 atatgggatgtcctctattcttctccaataatctgttcccaaagtataaaca 768666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 783788 - 783851
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    ||||| ||| |||||||||||||| | || |  ||||||||| |||||||||||||||||||||    
T  783788 aggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatcc 783851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 968730 - 968671
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| | ||||||||||| ||||||| ||||||||  |||||||||| |||||||||    
T  968730 aatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatc 968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 1007520 - 1007461
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| ||||||||||||| ||||| | ||||||||| |||||||| | |||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatc 1007461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 1022548 - 1022489
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| ||||||||||||| ||||| | ||||||||| |||||||| | |||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatc 1022489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 1931130 - 1931205
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| || || ||||||| ||||||||||||| || |||| ||||||||  ||| |||||| |||||||||    
T  1931130 gatcttgcatgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatc 1931205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 7432054 - 7432105
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||||||| || |||| ||||||||| ||||||||| ||||||||||    
T  7432054 acaatttagtccacgattctttatttccatattccttcatactccaaacatc 7432105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 783948 - 783990
Alignment:
Q  324 ttttgatacgactccttctctaaatcaagagaaataatgacat 366  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||    
T  783948 ttttgatacgactcattctccaaatcaagagaaacaatgacat 783990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 792893 - 792955
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||| | |||||| ||||||| || |  || ||||||||||||||||||||||||||    
T  792893 aggaatagtgaataatttactccaagattcctctttaccatactccttcataatccaaacatc 792955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 2502314 - 2502280
Alignment:
Q  96 accaatagttggtcatcctctgaaatatataaagc 130  Q
    ||||| |||||||||||||||||||||||||||||    
T  2502314 accaacagttggtcatcctctgaaatatataaagc 2502280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 2678388 - 2678450
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||| ||||||||||||| |||||||  |||||||| |  ||||||| |||||||||    
T  2678388 aggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 7443117 - 7443171
Alignment:
Q  303 tcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaa 357  Q
    ||| ||||||||||   ||| ||||||||||||||||| ||||||||||||||||    
T  7443117 tcggaatcaggtaggaaaagtttttgatacgactccttttctaaatcaagagaaa 7443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 9608341 - 9608395
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||| |||||||||||||| |||  ||||||||| |||||||||| |||||||||    
T  9608341 tgtataatttagtccaagaatctatatttccatattccttcataacccaaacatc 9608395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 754760 - 754797
Alignment:
Q  326 ttgatacgactccttctctaaatcaagagaaataatga 363  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  754760 ttgatatgactccttctctaaatcaagagaaagaatga 754797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  179 tttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    ||||||||||||||||| ||||||||| |||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  179 tttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    ||||||||||||||||| ||||||||| |||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 13479643 - 13479590
Alignment:
Q  161 gttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcat 214  Q
    ||||| ||||||| ||||||| ||||||||||||||| ||||||| || |||||    
T  13479643 gttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcat 13479590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 23197063 - 23197014
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    |||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  23197063 acaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 483
Target Start/End: Complemental strand, 2474898 - 2474842
Alignment:
Q  428 atatggaatgtccgctattcttctccaataatcagtcc-ccaaagtattaacactaa 483  Q
    |||||| |||||| |||||||| |||||||||||||||   ||||||||||||||||    
T  2474898 atatgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaa 2474842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 9608643 - 9608679
Alignment:
Q  447 cttctccaataatcagtccccaaagtattaacactaa 483  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9608643 cttctccaataatcagtgcccaaagtatgaacactaa 9608679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 13526511 - 13526471
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaataa 360  Q
    ||||||||||||||| ||||| || ||||||||||||||||    
T  13526511 aagcttttgatacgattccttttcaaaatcaagagaaataa 13526471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 14888604 - 14888660
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaac 223  Q
    |||| |||||||||||||| ||| ||||| |||| |||| || ||||||||||||||    
T  14888604 aatattgtacaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 37757733 - 37757781
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatcca 220  Q
    ||||||| || |||||||||||||  |||||||| ||||||||||||||    
T  37757733 tgtacaacttcgtccaagactctttgtttccatattccttcataatcca 37757781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 11081875 - 11081813
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  11081875 aggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 23766854 - 23766913
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 23816702 - 23816761
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 20293049 - 20292951
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    |||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||    ||||||| || || |||  ||||||||||||||||    
T  20293049 tgtataatttagtccaagactctttaattccatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20292951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 20301497 - 20301399
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    |||| ||||||||||||||||||| | || |||| ||||||||||||||||||||| |||    ||||||| || || |||  ||||||||||||||||    
T  20301497 tgtataatttagtccaagactctttaattgcatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20301399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 20305910 - 20305812
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    |||| ||||||||||||||||||| | ||||||| |||||||||||||| |||||| |||    ||||||| || || |||  ||||||||||||||||    
T  20305910 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20305812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 20310314 - 20310216
Alignment:
Q  172 tgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    |||| ||||||||||||||||||| | ||||||| |||||||||||||| |||||| |||    ||||||| || || |||  ||||||||||||||||    
T  20310314 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20310216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 23769639 - 23769697
Alignment:
Q  168 atagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||| ||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||    
T  23769639 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 23819487 - 23819545
Alignment:
Q  168 atagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||| ||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||    
T  23819487 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 2067048 - 2067104
Alignment:
Q  171 gtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    ||||||| |||| |||||||| ||  |||||||||||||||||||||||||||||||    
T  2067048 gtgtacagtttaatccaagaccctacatttccatactccttcataatccaaacatcc 2067104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 3181767 - 3181717
Alignment:
Q  176 caatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatc 3181717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 23732229 - 23732167
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||| ||| |||| |||||||| ||| ||| ||||| ||||||||||||||||||||    
T  23732229 aggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatc 23732167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 23861015 - 23861077
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||| ||||||||||||||||| |||   | ||||| |||||||| |||||||||||    
T  23861015 aggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 23861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 20292757 - 20292716
Alignment:
Q  443 tattcttctccaataatcagtccccaaagtattaacactaat 484  Q
    ||||||||||||||| ||||| |||||||||| |||||||||    
T  20292757 tattcttctccaatattcagtacccaaagtatgaacactaat 20292716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 20016160 - 20016232
Alignment:
Q  150 tgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 222  Q
    |||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  20016160 tgatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 20019748 - 20019823
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||||    
T  20019748 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 20019823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 22672119 - 22672175
Alignment:
Q  167 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaac 223  Q
    ||||||| |||||||||||||||| || | ||||||||| |||||||| | ||||||    
T  22672119 aatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 89218 - 89103
Alignment:
Q  151 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaa 250  Q
    |||||| || || ||||| | |||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||  || ||  ||||||||||  |||    
T  89218 gatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaa 89119  T
Q  251 gacacacaagcaatcc 266  Q
    ||  ||||||||||||    
T  89118 gatgcacaagcaatcc 89103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 364
Target Start/End: Complemental strand, 33038213 - 33038016
Alignment:
Q  173 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcacc 272  Q
    ||||||| |||||||||||| ||  |||||||| ||||||||||||||||||||  || |   |||||||||| ||||||  ||||||||||||||||      
T  33038213 gtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaacatatcactacttgcaaagatgcacaagcaatccctcaaa 33038114  T
Q  273 acacccaagtcccacgaatt------attttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataatgac 364  Q
    || ||||| |||| | ||||      |   ||||| || | |||||| |||  |||| |||||||||| |||||||| ||||||||||||| ||||||    
T  33038113 acccccaaatcccccaaatttgtcaaaggatcattctcaatatcaggcagcgaaagcgtttgatacgattccttctccaaatcaagagaaacaatgac 33038016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 36577417 - 36577366
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 7156192 - 7156243
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| |||||| |||| |||||||||||||||||||| |||||||||    
T  7156192 acaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 7160754 - 7160805
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||||||||| || | |||||||||||||||||||| |||||||||    
T  7160754 acaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 365
Target Start/End: Complemental strand, 33020366 - 33020177
Alignment:
Q  173 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctcacc 272  Q
    ||||||| |||||||||||| || ||||||||| |||||||||||||| ||||   || |   ||||||| || ||||||  ||||||||||||||||      
T  33020366 gtacaatctagtccaagactttttatttccatattccttcataatccacacattaaaaaacatatcactatttgcaaagaagcacaagcaatccctcaaa 33020267  T
Q  273 acacccaagtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaagagaaataatgaca 365  Q
    || ||||| |    | ||  |   || || ||||||||||| |||  || | ||||||||||||||||||| ||||||||||||| |||||||    
T  33020266 acccccaaatttgtcaaagga---tccttctcgaaatcaggcagcaaaaacgtttgatacgactccttctccaaatcaagagaaacaatgaca 33020177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 6538885 - 6538844
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataa 216  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  6538885 acaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 33026710 - 33026613
Alignment:
Q  173 gtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatccctca 270  Q
    ||||||| |||||||||||| || ||||||||| | |||||||| |||||||||| || |   |||| | ||| ||||||  ||||||||||||||||    
T  33026710 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctca 33026613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 7174373 - 7174424
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||| |||||||||| |||||||||||||| |||||||||| ||| |||||    
T  7174373 acaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 33026563 - 33026518
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaataatgaca 365  Q
    |||| |||||||| |||||||||| ||||||||||||| |||||||    
T  33026563 aagcgtttgatacaactccttctccaaatcaagagaaacaatgaca 33026518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 33037986 - 33037881
Alignment:
Q  376 accaattaacagtgccactaacaaatagtccatgtccacaaatggggttagaatatggaatgtccgctattcttctccaataatcagtccccaaagtatt 475  Q
    ||||||||||||||||||  ||||||| |||||  |||||||  |||  ||||||||| | ||| | ||| |||||||||  ||| || ||||||||||     
T  33037986 accaattaacagtgccaccgacaaatattccatacccacaaaacgggccagaatatgggaagtctggtatccttctccaagtatccgtacccaaagtatg 33037887  T
Q  476 aacact 481  Q
    ||||||    
T  33037886 aacact 33037881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 7168690 - 7168738
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaac 223  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  7168690 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 24417477 - 24417536
Alignment:
Q  166 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacat 225  Q
    ||||| ||||||||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  24417477 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 19119114 - 19119065
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    ||||||||||||||||||||| ||||||||| |||||||| | |||||||    
T  19119114 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 19126408 - 19126359
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaaca 224  Q
    ||||||||||||||||||||| ||||||||| |||||||| | |||||||    
T  19126408 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 17368417 - 17368366
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||||||||||| ||| |||||||||||| ||||| | |||||||||    
T  17368417 acaatttagtccaagacccttcatttccatactctttcatcagccaaacatc 17368366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 370785 - 370833
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaac 223  Q
    |||||||||||||||| |||| ||||||||| | |||||||| ||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 51381444 - 51381502
Alignment:
Q  164 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 222  Q
    ||||||| || ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 51858657 - 51858606
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||||||||||||| |||  ||||||||| |||||||| |||||||||||    
T  51858657 acaatttagtccaagattctacatttccatattccttcatgatccaaacatc 51858606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 23896147 - 23896188
Alignment:
Q  185 ccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||||| ||||||||| |||||||||| |||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatc 23896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  177 aatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||| |||||||||||| |||||| || |||||||||| |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 51407559 - 51407604
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatcca 220  Q
    |||||||||||||||||| || ||| ||||| ||||||||||||||    
T  51407559 acaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 51782848 - 51782799
Alignment:
Q  177 aatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    |||||| ||||||| | || ||||||||| ||||||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatc 51782799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 51829676 - 51829632
Alignment:
Q  320 aagcttttgatacgactccttctctaaatcaagagaaataatgac 364  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||||    
T  51829676 aagcgtttgatacgactccttctgtaaatcaaaagaaacaatgac 51829632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 1078160 - 1078212
Alignment:
Q  175 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 227  Q
    ||||||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  1078160 acaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1421170 - 1421220
Alignment:
Q  176 caatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||| |||||||||||| |||||| || |||||||||| |||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatc 1421220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 39299055 - 39298977
Alignment:
Q  148 cctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 226  Q
    ||||||||| || || ||||| | |||| ||||||||||| ||||||| ||||||| | ||||||| || |||||||||    
T  39299055 cctgatcttccatgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatc 39298977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 2191 - 2103
Alignment:
Q  178 atttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatcc 266  Q
    |||||||||||||||||  ||||||||| |||||||||  |||||||| | || |  ||||| ||||| ||||||  ||||||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcc 2103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 4686 - 4598
Alignment:
Q  178 atttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttccaaagacacacaagcaatcc 266  Q
    |||||||||||||||||  ||||||||| |||||||||  |||||||| | || |  ||||| ||||| ||||||  ||||||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcc 4598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University