View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_13 (Length: 452)
Name: NF20473_low_13
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 51877749 - 51877326
Alignment:
| Q |
16 |
attaggtcttgtaaaagataatgttattcaatatattggtcgaggaa---caggtaaattataatcacataacatttaacaaattatgagtgttgtgaaa |
112 |
Q |
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| T |
51877749 |
attagatcttgtaaaagataatgttattcaatatattggtcgaggaaaaacaggtaaattataatcacataacatttaacaaattatgagtgttgtgaaa |
51877650 |
T |
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| Q |
113 |
agactcaaatataaatgttttaaaattttgaacaaacttgttgtgtgaaacttagttgtttattgctcttagcctatatgtatgtatgatatcacgatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51877649 |
agactcaaatataaatgttttaaaattttgaacaaatttgttgggtgaaacttagttgtttattgctcttagcctatatgtatgtatgatatcacgatga |
51877550 |
T |
|
| Q |
213 |
gtatgccagaatcacggtgatctattattattttgaagaagctacaaattgtagcttttgaataatcatggttggctgtcgtaatttagagataactacc |
312 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
51877549 |
gtatgccagaatcacggtgatccactattattttgaagaagctacaaattgtagcttttgaataatcatggttggctgtcgtaattcaaagataactacc |
51877450 |
T |
|
| Q |
313 |
atgataccaaacatacggtacacgtgataattccatgat-atttaggtttcctttacgacctaacaagaggaaaggatgattattagttgtggaagctgg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51877449 |
gtgataccaaacatacggtacacgtgataattccatgatgttttaggtttcctttacgacccaacaagaggaaaggatgattattagttgtggaagctgg |
51877350 |
T |
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| Q |
412 |
cttaacttttccaatcaatgattt |
435 |
Q |
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| T |
51877349 |
cttaacttttccaatcaatgattt |
51877326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 44167630 - 44167561
Alignment:
| Q |
211 |
gagtatgccagaatcacggtgatctattattattttgaagaagctacaaattgtagcttttgaataatca |
280 |
Q |
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| T |
44167630 |
gagtatgtcagaatcacggtgatccatcataattttgtagaagctacattatgtagtttttgaaaaatca |
44167561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 5276964 - 5277032
Alignment:
| Q |
214 |
tatgccagaatcacggtgatctattattattttgaagaagctacaaattgtagcttttgaataatcatg |
282 |
Q |
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| T |
5276964 |
tatgtcagaatcacggtgatccatcatgattttgtagaaactacaaagtgtattttttgaaaaatcatg |
5277032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 42910451 - 42910517
Alignment:
| Q |
214 |
tatgccagaatcacggtgatctattattattttgaagaagctacaaattgtagcttttgaataatca |
280 |
Q |
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| T |
42910451 |
tatgccaaaatcacggtgatccattgtgattttgtagaagctacaaagtgcagcttttgaaaaatca |
42910517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 11669437 - 11669523
Alignment:
| Q |
193 |
tatgtatgatatcacgatgagtatgccagaatcacggtgatctattattattttgaagaagctacaaattgtagcttttgaataatc |
279 |
Q |
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| T |
11669437 |
tatgtttgatatcacgatgggtgtgccagagtcacgatgatccaccatgattttgctgaagctacgaagtgtagcttttgaaaaatc |
11669523 |
T |
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