View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_14 (Length: 451)
Name: NF20473_low_14
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 31405027 - 31404605
Alignment:
| Q |
18 |
tcttgttccctgacaaatctccttatttgagaatgaaattctttgaaaacaaattacctcatgtcattttaatttttacaatgccttgtaatattcagta |
117 |
Q |
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| T |
31405027 |
tcttgttccctgacaaatctccttatttgagaatgaaattctttgaaaacaaattacctcatgtcattttaatttttacaatgccttgtaatattcagtc |
31404928 |
T |
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| Q |
118 |
tagtttctgaagattcataaatgtctagtatatatcgattcttgttctgttttttgtgattaccagatattcatagatagtttttgcaaattaattcagg |
217 |
Q |
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| T |
31404927 |
tagtttctgaagattcataaatgtccagtatatatcgattcttgttctgttttctgtgattaccagagattcatagatagtttttgcaaattaattcagg |
31404828 |
T |
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| Q |
218 |
gaatgccactaaagtttctgctggatctctaaagctagtgccaggctagtgtttcaaacactgctactgatagttcacaagcatcgaaactaatttggtc |
317 |
Q |
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| T |
31404827 |
gaatgccactaaactttctgctggatctctaaagctagtgccaggctagtggttcaaacactgctactgatagttcacaagcatcgaaactaatttggtc |
31404728 |
T |
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| Q |
318 |
gtgaaattatgcttgtacagttcaattattcaagttagttgctaccaatttagagcagtttttataatcaaattttcaagatgacttataaaccgtggcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31404727 |
gtgaaattatgcttgtacagttcaattattcaagttagttgctaccaatttagagcagtttttataatcaaattttcaagatgacttataaaccatggcc |
31404628 |
T |
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| Q |
418 |
agaatttgtgaggttgagttcat |
440 |
Q |
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| T |
31404627 |
agaatttgtgaggttgagttcat |
31404605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 31332304 - 31332368
Alignment:
| Q |
59 |
tttgaaaacaaattacctcatgtcattttaatttttacaatgccttgtaatattcagtatagttt |
123 |
Q |
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|||||||||||||||||| || | ||||||||||||||||||||| | |||||| ||| |||||| |
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| T |
31332304 |
tttgaaaacaaattaccttattttattttaatttttacaatgcctagcaatatttagtctagttt |
31332368 |
T |
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