View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_15 (Length: 441)
Name: NF20473_low_15
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 48605529 - 48605941
Alignment:
| Q |
11 |
cagagaatccttttataccaccaaagtgcacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48605529 |
cagagaatccttttataccaccaaagtgtacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
48605628 |
T |
|
| Q |
111 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatgcttgtaatcctaacggtttga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48605629 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatacttgtaatcctaacggtttga |
48605728 |
T |
|
| Q |
211 |
gaggggtcatttggatttgaaaagttcctgtcaaatcttctcgggacagaatatacctcaggcaaatctaaaataaaattgagcatattacgtatcgtgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48605729 |
gaggggtcatttggatttgaaaagttcctgtcaaatcttctcgggacagaatatacctcaggcaaatctaaaataaaattgagcatattacgtatcgtgt |
48605828 |
T |
|
| Q |
311 |
caacatgatttgaatcgccccagaagaaaatccatcgattcttcaagcaattccaagcagactcagctgaatacatcttgaacgagcaatgtgtcgagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48605829 |
caacatgatttgaatcgccccagaagaaaatccatcgattcttcaagcaattccaagcagactcagctgaatacatcttgaacgagcaatgtgtcgagta |
48605928 |
T |
|
| Q |
411 |
cacccaaccatta |
423 |
Q |
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| T |
48605929 |
cacccaaccatta |
48605941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 48611125 - 48611537
Alignment:
| Q |
11 |
cagagaatccttttataccaccaaagtgcacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
110 |
Q |
| |
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|||||||| || ||||| || |||||| |||||||| || || |||||||| | |||||||||||| || ||||| |||||||||||||||| |||||| |
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| T |
48611125 |
cagagaatgctcgtatactacgaaagtggacaccgtcatgcaagccagagttcatgatcacagtgtctggtactgtgtcttctgagaagtatttcttcaa |
48611224 |
T |
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| Q |
111 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatgcttgtaatcctaacggtttga |
210 |
Q |
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||| |||||| | | |||| |||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
48611225 |
caagttttgaaagccctcatctctcagtgaatccagccctagatagttttgtgtttcattccaatgaccattgaagatgcttgtaatcctaacagtttga |
48611324 |
T |
|
| Q |
211 |
gaggggtcatttggatttgaaaagttcctgtcaaatcttctcgggacagaatatacctcaggcaaatctaaaataaaattgagcatattacgtatcgtgt |
310 |
Q |
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|| || || ||| |||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48611325 |
gacggatcggctgggtttgaaaaattcatgtcaaatcttcttgggacagaatgtacctcaggcaaatctaaaataaaattgagcatattacgtatcgtgt |
48611424 |
T |
|
| Q |
311 |
caacatgatttgaatcgccccagaagaaaatccatcgattcttcaagcaattccaagcagactcagctgaatacatcttgaacgagcaatgtgtcgagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
48611425 |
caacatgatttgaatcgccccagaagaaaatccatcgattcttcaagcaattccaagcagactcagctgaatacatcttgaatgagcaatgcgtcgagta |
48611524 |
T |
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| Q |
411 |
cacccaaccatta |
423 |
Q |
| |
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||||||||||||| |
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| T |
48611525 |
cacccaaccatta |
48611537 |
T |
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