View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20473_low_16 (Length: 430)
Name: NF20473_low_16
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 34760306 - 34760708
Alignment:
| Q |
13 |
aatatagagagcggtttggttttaagggnnnnnnnntgtcaatttagtcgttaagaatcacaattggaggttaatttagtctaaataaagtgatatatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
34760306 |
aatatagagagcggtttggttttaagggaaaaaaaatgtcaatttagtcgttaagaatctcaattggaggtcaatttaatctaaataaagtgatatatgt |
34760405 |
T |
|
| Q |
113 |
actgagatttaaaaacatatttatcatatgtttggaaatgtgattcctttagacaatttcaaggtgaaaattgacagcaagggttgagcttatgattttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
34760406 |
actgagatttaaaaacatatttatcatatgtttggaaatgtggtgcctttagacaatttcaaggtgaaaattcacggcgagggttgagcttatgattttc |
34760505 |
T |
|
| Q |
213 |
acggtgaacattgcattgg-aatgcaagaattggtgtgccaccacgtttttaaaccatctctgaagtccaaatctacgacgtatctcttgcaccatgcat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760506 |
acggtgaacattgcattgggaatgcaagaattggtgtgccaccacgtttttagaccatctatgaagtccaaatctacgacgtatctcttgcaccatgcat |
34760605 |
T |
|
| Q |
312 |
aagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttgg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760606 |
aagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttgg |
34760705 |
T |
|
| Q |
412 |
tgc |
414 |
Q |
| |
|
||| |
|
|
| T |
34760706 |
tgc |
34760708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 34766540 - 34766138
Alignment:
| Q |
13 |
aatatagagagcggtttggttttaagggnnnnnnnntgtcaatttagtcgttaagaatcacaattggaggttaatttagtctaaataaagtgatatatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
34766540 |
aatatagagagcggtttggttttaagggaaaaaaaatgtcaatttagtcgttaagaatctcaattggaggtcaatttaatctaaataaagtgatatatgt |
34766441 |
T |
|
| Q |
113 |
actgagatttaaaaacatatttatcatatgtttggaaatgtgattcctttagacaatttcaaggtgaaaattgacagcaagggttgagcttatgattttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
34766440 |
actgagatttaaaaacatatttatcatatgtttggaaatgtggtgcctttagacaatttcaaggtgaaaattcacggcgagggttgagcttatgattttc |
34766341 |
T |
|
| Q |
213 |
acggtgaacattgcattgg-aatgcaagaattggtgtgccaccacgtttttaaaccatctctgaagtccaaatctacgacgtatctcttgcaccatgcat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34766340 |
acggtgaacattgcattgggaatgcaagaattggtgtgccaccacgtttttagaccatctatgaagtccaaatctacgacgtatctcttgcaccatgcat |
34766241 |
T |
|
| Q |
312 |
aagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttgg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34766240 |
aagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttgg |
34766141 |
T |
|
| Q |
412 |
tgc |
414 |
Q |
| |
|
||| |
|
|
| T |
34766140 |
tgc |
34766138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 47873004 - 47873069
Alignment:
| Q |
349 |
ttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttggtgc |
414 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
47873004 |
ttaaattaaatgaaatatgatgagatttaatgatacaacagtggaaaataagtttgtgcttggtgc |
47873069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 8227538 - 8227596
Alignment:
| Q |
354 |
ttaaatgaagtatgatgagatttaatgattcaattatgcaaaataagtttgtgcttggt |
412 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||| || ||||||||||||||| |||| |
|
|
| T |
8227538 |
ttaaatgaaatatgatgagatttaacgatacaatggtggaaaataagtttgtgcgtggt |
8227596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 13587603 - 13587710
Alignment:
| Q |
297 |
tcttgcaccatgcataagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaattatgcaaaa |
396 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||| || |||| || |||| || |||||| ||||| |||||||||||||||||| | |||| |
|
|
| T |
13587603 |
tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaatatgacgagatttaatgattcaatgctagaaaa |
13587702 |
T |
|
| Q |
397 |
taagtttg |
404 |
Q |
| |
|
|||||||| |
|
|
| T |
13587703 |
taagtttg |
13587710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 27598165 - 27598255
Alignment:
| Q |
297 |
tcttgcaccatgcataagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgattcaat |
387 |
Q |
| |
|
|||||||||||||| || | |||||||| |||||||||| ||| ||| | |||| ||||||||| |||| ||||||||| |||| |||| |
|
|
| T |
27598165 |
tcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttattgatccaat |
27598255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 40210477 - 40210410
Alignment:
| Q |
316 |
ttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgatt |
383 |
Q |
| |
|
|||||| || ||||||||||| ||||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
40210477 |
ttgtttctattattggatcaataagtctcgttattaaattaaatgaaatatgatgagatttaatgatt |
40210410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 21001476 - 21001392
Alignment:
| Q |
297 |
tcttgcaccatgcataagtttgtttttactattggatcaacaagtctccctcttaatttaaatgaagtatgatgagatttaatgat |
382 |
Q |
| |
|
||||||||||| || ||| |||||||||| | |||||||||||||| || |||| ||||||| | ||||||||||||||||||| |
|
|
| T |
21001476 |
tcttgcaccattcacaaggttgtttttaccaatggatcaacaagtc-agctattaaattaaatgtaatatgatgagatttaatgat |
21001392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 8073671 - 8073709
Alignment:
| Q |
349 |
ttaatttaaatgaagtatgatgagatttaatgattcaat |
387 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
8073671 |
ttaaattaaatgaaatatgatgagatttaatgattcaat |
8073709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University