View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_2 (Length: 606)
Name: NF20473_low_2
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 11959631 - 11959899
Alignment:
| Q |
17 |
cataggacgtcttccaaccaaatcagagattgttccagaaaatatggtgacaacagtttcagttataaatgacattgacataattcctgttggatccttc |
116 |
Q |
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| T |
11959631 |
cataggacgtcttccaaccaaatcagagattgttccagaaaatatggtgacaacagtttcagttataaatgacattgacataattcctgttggatccttc |
11959730 |
T |
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| Q |
117 |
tcaaaatcaaattcttgtttgatataggtcatactatctcttcaaaccctaaat-catattgaaatctcctaaatca-ccaacaatttgaaatctcctaa |
214 |
Q |
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| T |
11959731 |
tcaaaatcaaattcttgtttgatataggtcatactatctcttcaaaccctaaatccata---aactcatctcaatcatccaacatattgaaatctcctaa |
11959827 |
T |
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| Q |
215 |
atcacagttccaccaaaatcgaaacccaaaatccaaaattgaatcgaaatttggattcgtgttcgggatcta |
286 |
Q |
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| T |
11959828 |
atcacagttccaccaaaatcgaaacccaaaatccaaaattgaatcgaaatttggattcgtgttcgggatcta |
11959899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 385 - 590
Target Start/End: Original strand, 11959998 - 11960203
Alignment:
| Q |
385 |
agttgaaagtgaggaaggtaatgaagaatcatgtgtaaatgatgacgaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagag |
484 |
Q |
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| T |
11959998 |
agttgaaagtgaggaaggtaatgaagaatcatgtgtaaatgatgacgaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagag |
11960097 |
T |
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| Q |
485 |
gagagttcttgtggttgcatggaggtggtgcgaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataatgatgaggaat |
584 |
Q |
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| T |
11960098 |
gagagttcttgtggttgcatggaggtggtgcaaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataatgatgaggaat |
11960197 |
T |
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| Q |
585 |
cacttg |
590 |
Q |
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| T |
11960198 |
cacttg |
11960203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 9953344 - 9953486
Alignment:
| Q |
17 |
cataggacgtcttccaaccaaatcagagattgttccagaaaatatggtgacaacagtttcagttataaatgacattgacataatt--cc-------tgtt |
107 |
Q |
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| T |
9953344 |
cataggccgtcttccaaccatatcagagattgttccagaaaatatggtgacaacagttccagttataaaagacattgacacaattaacccttcaagtgtt |
9953443 |
T |
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| Q |
108 |
ggatccttctcaaaatcaaattcttgtttgatataggtcatac |
150 |
Q |
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| T |
9953444 |
ggatccttctccaaatcaaattcctgtttgatataggtcatac |
9953486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19696172 - 19696245
Alignment:
| Q |
17 |
cataggacgtcttccaaccaaatcagagattgttccagaaaatatggtgacaacagtttcagttataaatgaca |
90 |
Q |
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| T |
19696172 |
cataggtcttcttccaaccaaatcagagattgttcctgaaaacatggtgacaactgttgctgttataaaagaca |
19696245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 1178836 - 1178893
Alignment:
| Q |
431 |
gaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagaggaga |
488 |
Q |
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| T |
1178836 |
gaagatgaaggttgaaggaagtgaaaaaatcaagaagcttgttgtcagagagaggaga |
1178893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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