View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_20 (Length: 396)
Name: NF20473_low_20
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 38661886 - 38661682
Alignment:
| Q |
16 |
aatataattaacacctatttcaattatcaagtnnnnnnntagttatactccctnnnnnnnn-caaagta-ttatgcccgttaaaatagaaacaattcaca |
113 |
Q |
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| T |
38661886 |
aatataattaacacctatttcaattatcaagtaaaaaaatagttatactccctaaaaaaaaacaaagtagttatgcccgttaaaatagaaacaattcaca |
38661787 |
T |
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| Q |
114 |
ataacaggaggaacaacccataacaacatgaatagtatttgtttttgaaagaaacaataggaataatagtggatactatagaaaaatattattttgacct |
213 |
Q |
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| T |
38661786 |
ataacaggaggaacaacccataacaacatgaatagtatttgtttttgaaagaaacaataggaataatattggatactatagaaaaatattattttgacct |
38661687 |
T |
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| Q |
214 |
tatat |
218 |
Q |
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||||| |
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| T |
38661686 |
tatat |
38661682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 38661474 - 38661392
Alignment:
| Q |
314 |
tcgttccttgtcaataaaaggaaaaagattgtcttgatgcagctaaatataatgaatgtagaagaaaatatataaatagaaaa |
396 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38661474 |
tcgttccttgtcaataaaagcagaaagattgtcttgatgcagctaaatataatgaatgtagaagaaaatatataaatagaaaa |
38661392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 38639576 - 38639639
Alignment:
| Q |
155 |
tttttgaaagaaacaataggaataatagtggatactatagaaaaatattattttgaccttatat |
218 |
Q |
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| T |
38639576 |
tttttgaaagagacaataggaataatattggatactatagaaaaatcttatttttaccctatat |
38639639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 38639721 - 38639791
Alignment:
| Q |
321 |
ttgtcaataaaaggaaaaagattgtcttgatgcagctaaatataatgaatgtagaagaaaatatataaata |
391 |
Q |
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||||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||||| |||||| |
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| T |
38639721 |
ttgtcaataaaagtggaaagattgttttgataaagttaaatataatgaatgtaaaagaaaatatttaaata |
38639791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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