View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20473_low_21 (Length: 388)

Name: NF20473_low_21
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20473_low_21
NF20473_low_21
[»] chr4 (3 HSPs)
chr4 (16-388)||(10369729-10370101)
chr4 (94-154)||(23564535-23564594)
chr4 (327-380)||(18932781-18932834)
[»] chr6 (2 HSPs)
chr6 (273-370)||(30618597-30618694)
chr6 (317-371)||(34661633-34661687)
[»] chr7 (4 HSPs)
chr7 (317-380)||(21619069-21619132)
chr7 (295-380)||(7517651-7517737)
chr7 (319-381)||(34218060-34218122)
chr7 (271-370)||(15902381-15902480)
[»] chr3 (3 HSPs)
chr3 (273-359)||(54769600-54769687)
chr3 (326-380)||(12114595-12114649)
chr3 (93-154)||(50196930-50196990)
[»] chr8 (1 HSPs)
chr8 (273-374)||(20995395-20995497)
[»] chr5 (3 HSPs)
chr5 (94-151)||(8401980-8402036)
chr5 (273-342)||(9510500-9510569)
chr5 (295-379)||(36522238-36522323)
[»] chr1 (1 HSPs)
chr1 (319-380)||(41157446-41157507)
[»] chr2 (2 HSPs)
chr2 (273-309)||(30312933-30312969)
chr2 (320-380)||(36784287-36784347)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 10369729 - 10370101
Alignment:
Q  16 taaacctctaaccatatactcacctacccaccctcacgtgggtcttgcgtccaattctcacataatcagccttaacttggctctgataccatgttaaata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10369729 taaacctctaaccatatactcacctacccaccctcacgtgggtcttgcgtccaattctcacataatcagccttaacttggctctgataccatgttaaata 10369828  T
Q  116 ggcttagatctcattatcaaaagttaactcaaaggatgaacatgcccaaccacatatatacatccaacagcccagcccgaaaaccttgtcaatgtaggac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||| ||||    
T  10369829 ggcttagatctcattatcaaaagttaactcaaaggatgaacatgcccaaccacatatatacatccgacagcctagcccggaaaccttgtcgatgtgggac 10369928  T
Q  216 tccaaaacaacttcaaaacccacatccaaaatgaccatccgaaactagttaagactattgggtcacgagggaagctcgagggaccacccacattaggcaa 315  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10369929 tccaagacaacttcaatacccacatccaaaatgaccatcctaaactagttaagactattgggtcaccagggaagctcgagggaccacccacattaggcaa 10370028  T
Q  316 aagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatgatcctctc 388  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10370029 aagcaaccatacaagtaagacagacgccgcacttttatttaaaaccttaagacaatggatttatgatcctctc 10370101  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 23564535 - 23564594
Alignment:
Q  94 ggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaaggatga 154  Q
    |||||||||||||||||||||||| || ||||||| |  ||||||||| ||||||||||||    
T  23564535 ggctctgataccatgttaaataggtttggatctca-tcccaaaagttagctcaaaggatga 23564594  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 18932781 - 18932834
Alignment:
Q  327 caagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    ||||||||| ||||||| |||| |||  |||||||||||| |||||||||||||    
T  18932781 caagtaagagagacaccacactcttacctaaaaccttaaggcaatgggtttatg 18932834  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 30618597 - 30618694
Alignment:
Q  273 ttgggtcacgagggaagctcgagggaccacccacattaggcaaaagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaa 370  Q
    |||||||||||||| |||    ||||||||||||||||||||| |||||||| | |||||||| ||||||| || |||||   | |||||||||||||    
T  30618597 ttgggtcacgaggggagccttggggaccacccacattaggcaagagcaaccacataagtaagagagacaccacatttttacccataaccttaagacaa 30618694  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 34661633 - 34661687
Alignment:
Q  317 agcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaat 371  Q
    ||||||||||||||| |||||| |||| |||||| |  |||||||||||||||||    
T  34661633 agcaaccatacaagtgagacagccaccacactttaacgtaaaaccttaagacaat 34661687  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 21619069 - 21619132
Alignment:
Q  317 agcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    ||||||||||||||| | | | ||||| ||||||||   |||||||||||||||||||||||||    
T  21619069 agcaaccatacaagtgaaagatacaccacacttttacccaaaaccttaagacaatgggtttatg 21619132  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 7517737 - 7517651
Alignment:
Q  295 gggaccacccacatt-aggcaaaagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    ||||||||||||||  |||| | | |||||| |||||| ||||||||||| |||| |||   ||||||||||| |||||||||||||    
T  7517737 gggaccacccacatcgaggctagaacaaccacacaagtgagacagacaccacactcttacccaaaaccttaaggcaatgggtttatg 7517651  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 34218060 - 34218122
Alignment:
Q  319 caaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatga 381  Q
    ||||||||||||  ||| ||||||| |||| |||   ||||||||||||||||||||||||||    
T  34218060 caaccatacaagcgagagagacaccacactcttacccaaaaccttaagacaatgggtttatga 34218122  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 15902480 - 15902381
Alignment:
Q  271 tattgggtcacgagggaagctcgagggaccacccacat-taggcaaaagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagaca 369  Q
    |||||||||||||||| ||  || ||||||||||||||  ||||| || ||| || |||||| |||  |||||| |||||||||  ||||||||||||||    
T  15902480 tattgggtcacgaggggagtccgggggaccacccacatccaggcagaa-caatcacacaagtgagagcgacaccacacttttatccaaaaccttaagaca 15902382  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 54769600 - 54769687
Alignment:
Q  273 ttgggtcacgagggaagctcgagggaccacccacattaggcaaaagcaaccatacaagtaagacagacacc-gcacttttatttaaaa 359  Q
    |||||||||| |||||| | || |||  ||||||||||||||| |||||||| | |||||||| |||||||  ||||||||| |||||    
T  54769600 ttgggtcacgcgggaagtttgatggatgacccacattaggcaagagcaaccacataagtaagagagacaccaccacttttatctaaaa 54769687  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 12114595 - 12114649
Alignment:
Q  326 acaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    |||||||||| ||||||| |||| |||   |||||||||||||||||||||||||    
T  12114595 acaagtaagagagacaccacactcttacccaaaaccttaagacaatgggtttatg 12114649  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 50196990 - 50196930
Alignment:
Q  93 tggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaaggatga 154  Q
    ||||| ||||||||||||||||||| || ||||||| |  ||||||||| ||||||||||||    
T  50196990 tggctttgataccatgttaaataggtttggatctca-tcccaaaagttagctcaaaggatga 50196930  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 20995395 - 20995497
Alignment:
Q  273 ttgggtcacgagggaagctcgagggaccacccacat-taggcaaaagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaat 371  Q
    |||||||||||||| |||  ||||||||||||| || ||||| | |||||||| |||||| ||| ||||||| || | |||   ||||||||||| ||||    
T  20995395 ttgggtcacgaggggagccagagggaccacccatatctaggccagagcaaccacacaagtgagagagacaccacattcttacccaaaaccttaaggcaat 20995494  T
Q  372 ggg 374  Q
    |||    
T  20995495 ggg 20995497  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 8401980 - 8402036
Alignment:
Q  94 ggctctgataccatgttaaataggcttagatctcattatcaaaagttaactcaaagga 151  Q
    |||||||||||||||||||||| | || |||||||||  ||||||||| |||||||||    
T  8401980 ggctctgataccatgttaaataagtttggatctcatt-ccaaaagttagctcaaagga 8402036  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 9510500 - 9510569
Alignment:
Q  273 ttgggtcacgagggaagctcgagggaccacccacattaggcaaaagcaaccatacaagtaagacagacac 342  Q
    |||||||| ||||| | | || ||||||||  ||||||| |||||||||||| |||||||||| ||||||    
T  9510500 ttgggtcaagaggggatcccgtgggaccactaacattagacaaaagcaaccacacaagtaagagagacac 9510569  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 36522238 - 36522323
Alignment:
Q  295 gggaccacccacatt-aggcaaaagcaaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttat 379  Q
    ||||||||||||||| |||| |||||| ||  |||||| ||| ||||||| |||| |||   |||||||||||| |||||||||||    
T  36522238 gggaccacccacattcaggccaaagcagccgcacaagtgagagagacaccacactcttacccaaaaccttaagataatgggtttat 36522323  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 41157507 - 41157446
Alignment:
Q  319 caaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    |||||| ||||| |||||||||||| |||| ||| | ||||||| ||| |||||||||||||    
T  41157507 caaccacacaagcaagacagacaccacactcttactcaaaacctaaaggcaatgggtttatg 41157446  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 30312969 - 30312933
Alignment:
Q  273 ttgggtcacgagggaagctcgagggaccacccacatt 309  Q
    |||||||||||||| |||||| |||||||||||||||    
T  30312969 ttgggtcacgaggggagctcgggggaccacccacatt 30312933  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 36784287 - 36784347
Alignment:
Q  320 aaccatacaagtaagacagacaccgcacttttatttaaaaccttaagacaatgggtttatg 380  Q
    ||||| ||||| |||| ||||||  |||||||||  ||||||||||||||| |||||||||    
T  36784287 aaccacacaagcaagagagacacaacacttttatccaaaaccttaagacaaagggtttatg 36784347  T

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