View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_22 (Length: 386)
Name: NF20473_low_22
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 53734587 - 53734761
Alignment:
| Q |
178 |
gacaatgttgatctcaaccattttcctcatagcatctctcgtggtggaattcatcttggatttcatagagcaccaataaatagccttgcaataatgcatc |
277 |
Q |
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| T |
53734587 |
gacaatgttgatcgcaaccattttcctcatagcatctctcgtggtggaattcatcttggatttcatagagcatcaataaatagccttgcaataatgcatc |
53734686 |
T |
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| Q |
278 |
atatttatacaactcgtacacannnnnnngctctaatggtgaataattgtacaactattaagtaatcaacattttt |
353 |
Q |
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| T |
53734687 |
atatttatgcaactcgtacacattttttt-ctctaatggtgaataattgtacaactcttaagtaatcaacattttt |
53734761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 53733363 - 53733421
Alignment:
| Q |
15 |
atttatctcatttcatcttgataaattagcatttagaaataccaacggatgcccccaaa |
73 |
Q |
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| T |
53733363 |
atttatctcatttcatcttaataaattagcatttagaaataccaacggatgcccccaaa |
53733421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 53733436 - 53733480
Alignment:
| Q |
131 |
agttagcaagatccactaacatttatttaattaggaatacatgat |
175 |
Q |
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| T |
53733436 |
agttagcaagatccactaacatttatttaattaggaatacatgat |
53733480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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