View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20473_low_23 (Length: 375)
Name: NF20473_low_23
Description: NF20473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20473_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 11312378 - 11312022
Alignment:
| Q |
1 |
tctgaagattttccccaggcacttgctgctcttgctctaaatgacacaaaggaccagtccttcattgtagattctggagctacatcccacatgatcaatg |
100 |
Q |
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| T |
11312378 |
tctgaagattttccccaggcacttgctgctcttgctctaaatgacacaaaggaccagtccttcattgtagattctggagctacatcccacatgatcaatg |
11312279 |
T |
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| Q |
101 |
atgcaggtaatttatcctatgttaagacttatcatggaaatgatgtaatctatgtgggtgatggaaataacataccaataacacatactggtgatgtgaa |
200 |
Q |
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| T |
11312278 |
atgcaggtaatttatcctatgttaagccttatcatggaaatgatgtaatctatgtgggtgatggaaataacataccaataacacatactggtgatgtgaa |
11312179 |
T |
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| Q |
201 |
tgttgttacatctaatggaaacttaaaattaaaagatgttctggtggttccagacttaaagaagaatttgctttctgttggaaaatttgtgtctgataac |
300 |
Q |
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| T |
11312178 |
tgttgttacatctaatggaaacttaaaattaaaagatgttctggtggttccagacttaaagaagaatttgctttctgttggaaaatttgtgtctgataac |
11312079 |
T |
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| Q |
301 |
caatgcatttttgaattgacttctgctggatttgttattaaggatcaaagtcaaaag |
357 |
Q |
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| T |
11312078 |
caatgcatttttgaattcacttcttctggatttgttattaaggatcaaagtcaaaag |
11312022 |
T |
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